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A toolkit for working with Biological Observation Matrix ('BIOM') files. Features include reading/writing all 'BIOM' formats, rarefaction, alpha diversity, beta diversity (including 'UniFrac'), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided. All CPU intensive operations are encoded in C with multi-thread support.

copied from cf-post-staging / r-rbiom
Type Size Name Uploaded Downloads Labels
conda 1.6 MB | linux-ppc64le/r-rbiom-2.0.13-r44h8455397_0.conda  6 months and 14 days ago 930 main
conda 1.6 MB | linux-aarch64/r-rbiom-2.0.13-r44h21d2c02_0.conda  6 months and 14 days ago 958 main
conda 1.5 MB | linux-aarch64/r-rbiom-2.0.13-r43h21d2c02_0.conda  6 months and 14 days ago 990 main
conda 1.5 MB | linux-ppc64le/r-rbiom-2.0.13-r43h8455397_0.conda  6 months and 14 days ago 939 main
conda 1.5 MB | linux-aarch64/r-rbiom-2.0.13-r43h9d76b47_0.conda  6 months and 24 days ago 141 main
conda 1.6 MB | linux-aarch64/r-rbiom-2.0.13-r44h9d76b47_0.conda  6 months and 24 days ago 129 main
conda 1.5 MB | osx-arm64/r-rbiom-2.0.13-r43h31118f2_0.conda  6 months and 24 days ago 258 main
conda 1.6 MB | osx-arm64/r-rbiom-2.0.13-r44h31118f2_0.conda  6 months and 24 days ago 261 main
conda 1.6 MB | osx-64/r-rbiom-2.0.13-r44h2711daa_0.conda  6 months and 24 days ago 231 main
conda 1.5 MB | osx-64/r-rbiom-2.0.13-r43h2711daa_0.conda  6 months and 24 days ago 242 main
conda 1.5 MB | linux-64/r-rbiom-2.0.13-r43h93ab643_0.conda  6 months and 24 days ago 755 main
conda 1.6 MB | linux-64/r-rbiom-2.0.13-r44h93ab643_0.conda  6 months and 24 days ago 979 main

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