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A toolkit for working with Biological Observation Matrix ('BIOM') files. Features include reading/writing all 'BIOM' formats, rarefaction, alpha diversity, beta diversity (including 'UniFrac'), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided. All CPU intensive operations are encoded in C with multi-thread support.

copied from cf-staging / r-rbiom
Type Size Name Uploaded Downloads Labels
conda 1.6 MB | linux-ppc64le/r-rbiom-2.0.13-r44h8455397_0.conda  2 months and 19 days ago 925 main
conda 1.6 MB | linux-aarch64/r-rbiom-2.0.13-r44h21d2c02_0.conda  2 months and 19 days ago 943 main
conda 1.5 MB | linux-aarch64/r-rbiom-2.0.13-r43h21d2c02_0.conda  2 months and 19 days ago 976 main
conda 1.5 MB | linux-ppc64le/r-rbiom-2.0.13-r43h8455397_0.conda  2 months and 19 days ago 934 main
conda 1.5 MB | linux-aarch64/r-rbiom-2.0.13-r43h9d76b47_0.conda  2 months and 29 days ago 125 main
conda 1.6 MB | linux-aarch64/r-rbiom-2.0.13-r44h9d76b47_0.conda  2 months and 29 days ago 113 main
conda 1.5 MB | osx-arm64/r-rbiom-2.0.13-r43h31118f2_0.conda  2 months and 29 days ago 248 main
conda 1.6 MB | osx-arm64/r-rbiom-2.0.13-r44h31118f2_0.conda  2 months and 29 days ago 248 main
conda 1.6 MB | osx-64/r-rbiom-2.0.13-r44h2711daa_0.conda  2 months and 29 days ago 221 main
conda 1.5 MB | osx-64/r-rbiom-2.0.13-r43h2711daa_0.conda  2 months and 29 days ago 231 main
conda 1.5 MB | linux-64/r-rbiom-2.0.13-r43h93ab643_0.conda  2 months and 29 days ago 464 main
conda 1.6 MB | linux-64/r-rbiom-2.0.13-r44h93ab643_0.conda  2 months and 29 days ago 709 main

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