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A toolkit for working with Biological Observation Matrix ('BIOM') files. Features include reading/writing all 'BIOM' formats, rarefaction, alpha diversity, beta diversity (including 'UniFrac'), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided. All CPU intensive operations are encoded in C with multi-thread support.

copied from cf-staging / r-rbiom
Type Size Name Uploaded Downloads Labels
conda 1.6 MB | osx-arm64/r-rbiom-2.1.1-r44h31118f2_0.conda  6 days and 18 hours ago 11 main
conda 1.6 MB | osx-arm64/r-rbiom-2.1.1-r43h31118f2_0.conda  6 days and 18 hours ago 11 main
conda 1.6 MB | osx-64/r-rbiom-2.1.1-r44h2711daa_0.conda  6 days and 18 hours ago 15 main
conda 1.6 MB | linux-ppc64le/r-rbiom-2.1.1-r44h8455397_0.conda  6 days and 18 hours ago 7 main
conda 1.6 MB | linux-aarch64/r-rbiom-2.1.1-r44h21d2c02_0.conda  6 days and 18 hours ago 12 main
conda 1.6 MB | linux-ppc64le/r-rbiom-2.1.1-r43h8455397_0.conda  6 days and 18 hours ago 6 main
conda 1.6 MB | osx-64/r-rbiom-2.1.1-r43h2711daa_0.conda  6 days and 18 hours ago 15 main
conda 1.6 MB | linux-aarch64/r-rbiom-2.1.1-r43h21d2c02_0.conda  6 days and 18 hours ago 14 main
conda 1.6 MB | linux-64/r-rbiom-2.1.1-r43h93ab643_0.conda  6 days and 18 hours ago 63 main
conda 1.6 MB | linux-64/r-rbiom-2.1.1-r44h93ab643_0.conda  6 days and 18 hours ago 123 main
conda 1.6 MB | linux-ppc64le/r-rbiom-2.0.13-r44h8455397_0.conda  1 month and 14 days ago 921 main
conda 1.6 MB | linux-aarch64/r-rbiom-2.0.13-r44h21d2c02_0.conda  1 month and 14 days ago 935 main
conda 1.5 MB | linux-aarch64/r-rbiom-2.0.13-r43h21d2c02_0.conda  1 month and 14 days ago 967 main
conda 1.5 MB | linux-ppc64le/r-rbiom-2.0.13-r43h8455397_0.conda  1 month and 14 days ago 931 main
conda 1.5 MB | linux-aarch64/r-rbiom-2.0.13-r43h9d76b47_0.conda  1 month and 21 days ago 115 main
conda 1.6 MB | linux-aarch64/r-rbiom-2.0.13-r44h9d76b47_0.conda  1 month and 21 days ago 104 main
conda 1.5 MB | osx-arm64/r-rbiom-2.0.13-r43h31118f2_0.conda  1 month and 21 days ago 236 main
conda 1.6 MB | osx-arm64/r-rbiom-2.0.13-r44h31118f2_0.conda  1 month and 21 days ago 235 main
conda 1.6 MB | osx-64/r-rbiom-2.0.13-r44h2711daa_0.conda  1 month and 21 days ago 215 main
conda 1.5 MB | osx-64/r-rbiom-2.0.13-r43h2711daa_0.conda  1 month and 21 days ago 222 main
conda 1.5 MB | linux-64/r-rbiom-2.0.13-r43h93ab643_0.conda  1 month and 21 days ago 375 main
conda 1.6 MB | linux-64/r-rbiom-2.0.13-r44h93ab643_0.conda  1 month and 21 days ago 616 main
conda 1.6 MB | linux-aarch64/r-rbiom-2.0.10-r44h9d76b47_0.conda  1 month and 22 days ago 121 main
conda 1.5 MB | linux-aarch64/r-rbiom-2.0.10-r43h9d76b47_0.conda  1 month and 22 days ago 124 main
conda 1.6 MB | osx-arm64/r-rbiom-2.0.10-r44h31118f2_0.conda  1 month and 23 days ago 235 main
conda 1.5 MB | osx-arm64/r-rbiom-2.0.10-r43h31118f2_0.conda  1 month and 23 days ago 234 main
conda 1.5 MB | osx-64/r-rbiom-2.0.10-r43h2711daa_0.conda  1 month and 23 days ago 193 main
conda 1.6 MB | osx-64/r-rbiom-2.0.10-r44h2711daa_0.conda  1 month and 23 days ago 206 main
conda 1.6 MB | linux-64/r-rbiom-2.0.10-r44h93ab643_0.conda  1 month and 23 days ago 289 main
conda 1.5 MB | linux-64/r-rbiom-2.0.10-r43h93ab643_0.conda  1 month and 23 days ago 307 main
conda 300.9 kB | win-64/r-rbiom-1.0.3-r44h8ae3a7c_3.conda  6 months and 23 days ago 274 main
conda 297.9 kB | win-64/r-rbiom-1.0.3-r43h8ae3a7c_3.conda  6 months and 23 days ago 276 main
conda 295.3 kB | osx-arm64/r-rbiom-1.0.3-r44hdd833ad_3.conda  6 months and 23 days ago 198 main
conda 291.2 kB | osx-arm64/r-rbiom-1.0.3-r43hdd833ad_3.conda  6 months and 23 days ago 173 main
conda 293.5 kB | osx-64/r-rbiom-1.0.3-r43hc83a2cd_3.conda  6 months and 23 days ago 296 main
conda 296.4 kB | osx-64/r-rbiom-1.0.3-r44hc83a2cd_3.conda  6 months and 23 days ago 238 main
conda 311.6 kB | linux-64/r-rbiom-1.0.3-r43h93ab643_3.conda  6 months and 23 days ago 1969 main
conda 313.7 kB | linux-64/r-rbiom-1.0.3-r44h93ab643_3.conda  6 months and 23 days ago 1045 main
conda 293.6 kB | osx-64/r-rbiom-1.0.3-r42h64b2c41_2.conda  1 year and 3 months ago 346 main
conda 400.6 kB | osx-arm64/r-rbiom-1.0.3-r42he96f11e_2.conda  1 year and 3 months ago 265 main
conda 400.9 kB | osx-arm64/r-rbiom-1.0.3-r43he96f11e_2.conda  1 year and 3 months ago 240 main
conda 293.6 kB | osx-64/r-rbiom-1.0.3-r43h64b2c41_2.conda  1 year and 3 months ago 345 main
conda 303.6 kB | win-64/r-rbiom-1.0.3-r41ha856d6a_2.conda  1 year and 8 months ago 482 main
conda 294.7 kB | osx-64/r-rbiom-1.0.3-r42hac7d2d5_2.conda  1 year and 8 months ago 264 main
conda 294.4 kB | osx-64/r-rbiom-1.0.3-r43hac7d2d5_2.conda  1 year and 8 months ago 251 main
conda 308.1 kB | linux-64/r-rbiom-1.0.3-r43ha503ecb_2.conda  1 year and 8 months ago 2997 main
conda 309.0 kB | linux-64/r-rbiom-1.0.3-r42ha503ecb_2.conda  1 year and 8 months ago 2922 main
conda 342.9 kB | win-64/r-rbiom-1.0.3-r41ha856d6a_1.tar.bz2  2 years and 5 months ago 540 main
conda 321.7 kB | osx-64/r-rbiom-1.0.3-r42h49197e3_1.tar.bz2  2 years and 5 months ago 98 main
conda 321.5 kB | osx-64/r-rbiom-1.0.3-r41h49197e3_1.tar.bz2  2 years and 5 months ago 83 main

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