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A toolkit for working with Biological Observation Matrix ('BIOM') files. Features include reading/writing all 'BIOM' formats, rarefaction, alpha diversity, beta diversity (including 'UniFrac'), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided. All CPU intensive operations are encoded in C with multi-thread support.

copied from cf-staging / r-rbiom
Type Size Name Uploaded Downloads Labels
conda 1.5 MB | linux-aarch64/r-rbiom-2.0.13-r43h9d76b47_0.conda  20 hours and 17 minutes ago 10 main
conda 1.6 MB | linux-aarch64/r-rbiom-2.0.13-r44h9d76b47_0.conda  20 hours and 19 minutes ago 8 main
conda 1.5 MB | osx-arm64/r-rbiom-2.0.13-r43h31118f2_0.conda  20 hours and 42 minutes ago 12 main
conda 1.6 MB | osx-arm64/r-rbiom-2.0.13-r44h31118f2_0.conda  20 hours and 43 minutes ago 12 main
conda 1.6 MB | osx-64/r-rbiom-2.0.13-r44h2711daa_0.conda  20 hours and 44 minutes ago 12 main
conda 1.5 MB | osx-64/r-rbiom-2.0.13-r43h2711daa_0.conda  20 hours and 45 minutes ago 10 main
conda 1.5 MB | linux-64/r-rbiom-2.0.13-r43h93ab643_0.conda  20 hours and 47 minutes ago 24 main
conda 1.6 MB | linux-64/r-rbiom-2.0.13-r44h93ab643_0.conda  20 hours and 48 minutes ago 29 main
conda 1.6 MB | linux-aarch64/r-rbiom-2.0.10-r44h9d76b47_0.conda  2 days and 6 hours ago 12 main
conda 1.5 MB | linux-aarch64/r-rbiom-2.0.10-r43h9d76b47_0.conda  2 days and 6 hours ago 15 main
conda 1.6 MB | osx-arm64/r-rbiom-2.0.10-r44h31118f2_0.conda  2 days and 12 hours ago 20 main
conda 1.5 MB | osx-arm64/r-rbiom-2.0.10-r43h31118f2_0.conda  2 days and 12 hours ago 17 main
conda 1.5 MB | osx-64/r-rbiom-2.0.10-r43h2711daa_0.conda  2 days and 12 hours ago 18 main
conda 1.6 MB | osx-64/r-rbiom-2.0.10-r44h2711daa_0.conda  2 days and 12 hours ago 20 main
conda 1.6 MB | linux-64/r-rbiom-2.0.10-r44h93ab643_0.conda  2 days and 12 hours ago 45 main
conda 1.5 MB | linux-64/r-rbiom-2.0.10-r43h93ab643_0.conda  2 days and 12 hours ago 41 main
conda 300.9 kB | win-64/r-rbiom-1.0.3-r44h8ae3a7c_3.conda  5 months and 2 days ago 139 main
conda 297.9 kB | win-64/r-rbiom-1.0.3-r43h8ae3a7c_3.conda  5 months and 2 days ago 137 main
conda 295.3 kB | osx-arm64/r-rbiom-1.0.3-r44hdd833ad_3.conda  5 months and 2 days ago 82 main
conda 291.2 kB | osx-arm64/r-rbiom-1.0.3-r43hdd833ad_3.conda  5 months and 2 days ago 73 main
conda 293.5 kB | osx-64/r-rbiom-1.0.3-r43hc83a2cd_3.conda  5 months and 2 days ago 191 main
conda 296.4 kB | osx-64/r-rbiom-1.0.3-r44hc83a2cd_3.conda  5 months and 2 days ago 137 main
conda 311.6 kB | linux-64/r-rbiom-1.0.3-r43h93ab643_3.conda  5 months and 2 days ago 1746 main
conda 313.7 kB | linux-64/r-rbiom-1.0.3-r44h93ab643_3.conda  5 months and 2 days ago 825 main
conda 293.6 kB | osx-64/r-rbiom-1.0.3-r42h64b2c41_2.conda  1 year and 1 month ago 237 main
conda 400.6 kB | osx-arm64/r-rbiom-1.0.3-r42he96f11e_2.conda  1 year and 1 month ago 148 main
conda 400.9 kB | osx-arm64/r-rbiom-1.0.3-r43he96f11e_2.conda  1 year and 1 month ago 134 main
conda 293.6 kB | osx-64/r-rbiom-1.0.3-r43h64b2c41_2.conda  1 year and 1 month ago 261 main
conda 303.6 kB | win-64/r-rbiom-1.0.3-r41ha856d6a_2.conda  1 year and 7 months ago 353 main
conda 294.7 kB | osx-64/r-rbiom-1.0.3-r42hac7d2d5_2.conda  1 year and 7 months ago 163 main
conda 294.4 kB | osx-64/r-rbiom-1.0.3-r43hac7d2d5_2.conda  1 year and 7 months ago 156 main
conda 308.1 kB | linux-64/r-rbiom-1.0.3-r43ha503ecb_2.conda  1 year and 7 months ago 2801 main
conda 309.0 kB | linux-64/r-rbiom-1.0.3-r42ha503ecb_2.conda  1 year and 7 months ago 2611 main
conda 342.9 kB | win-64/r-rbiom-1.0.3-r41ha856d6a_1.tar.bz2  2 years and 3 months ago 538 main
conda 321.7 kB | osx-64/r-rbiom-1.0.3-r42h49197e3_1.tar.bz2  2 years and 3 months ago 93 main
conda 321.5 kB | osx-64/r-rbiom-1.0.3-r41h49197e3_1.tar.bz2  2 years and 3 months ago 82 main
conda 339.9 kB | linux-64/r-rbiom-1.0.3-r41h7525677_1.tar.bz2  2 years and 3 months ago 1723 main
conda 340.3 kB | linux-64/r-rbiom-1.0.3-r42h7525677_1.tar.bz2  2 years and 3 months ago 1713 main
conda 351.9 kB | win-64/r-rbiom-1.0.3-r40ha856d6a_0.tar.bz2  3 years and 2 months ago 747 main
conda 342.3 kB | win-64/r-rbiom-1.0.3-r41ha856d6a_0.tar.bz2  3 years and 2 months ago 714 main
conda 313.6 kB | osx-64/r-rbiom-1.0.3-r41h9951f98_0.tar.bz2  3 years and 2 months ago 87 main
conda 313.5 kB | osx-64/r-rbiom-1.0.3-r40h9951f98_0.tar.bz2  3 years and 2 months ago 96 main
conda 345.0 kB | linux-64/r-rbiom-1.0.3-r40h03ef668_0.tar.bz2  3 years and 2 months ago 2171 main
conda 345.2 kB | linux-64/r-rbiom-1.0.3-r41h03ef668_0.tar.bz2  3 years and 2 months ago 2092 main
conda 352.5 kB | win-64/r-rbiom-1.0.2-r40ha856d6a_0.tar.bz2  3 years and 3 months ago 725 main
conda 341.8 kB | win-64/r-rbiom-1.0.2-r41ha856d6a_0.tar.bz2  3 years and 3 months ago 748 main
conda 313.2 kB | osx-64/r-rbiom-1.0.2-r40h9951f98_0.tar.bz2  3 years and 3 months ago 91 main
conda 313.2 kB | osx-64/r-rbiom-1.0.2-r41h9951f98_0.tar.bz2  3 years and 3 months ago 93 main
conda 344.8 kB | linux-64/r-rbiom-1.0.2-r40h03ef668_0.tar.bz2  3 years and 3 months ago 2117 main
conda 344.9 kB | linux-64/r-rbiom-1.0.2-r41h03ef668_0.tar.bz2  3 years and 3 months ago 2124 main

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