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A toolkit for working with Biological Observation Matrix ('BIOM') files. Features include reading/writing all 'BIOM' formats, rarefaction, alpha diversity, beta diversity (including 'UniFrac'), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided. All CPU intensive operations are encoded in C with multi-thread support.

copied from cf-staging / r-rbiom
Type Size Name Uploaded Downloads Labels
conda 300.9 kB | win-64/r-rbiom-1.0.3-r44h8ae3a7c_3.conda  4 months and 18 days ago 132 main
conda 297.9 kB | win-64/r-rbiom-1.0.3-r43h8ae3a7c_3.conda  4 months and 18 days ago 130 main
conda 295.3 kB | osx-arm64/r-rbiom-1.0.3-r44hdd833ad_3.conda  4 months and 19 days ago 77 main
conda 291.2 kB | osx-arm64/r-rbiom-1.0.3-r43hdd833ad_3.conda  4 months and 19 days ago 68 main
conda 293.5 kB | osx-64/r-rbiom-1.0.3-r43hc83a2cd_3.conda  4 months and 19 days ago 184 main
conda 296.4 kB | osx-64/r-rbiom-1.0.3-r44hc83a2cd_3.conda  4 months and 19 days ago 124 main
conda 311.6 kB | linux-64/r-rbiom-1.0.3-r43h93ab643_3.conda  4 months and 19 days ago 1682 main
conda 313.7 kB | linux-64/r-rbiom-1.0.3-r44h93ab643_3.conda  4 months and 19 days ago 693 main
conda 293.6 kB | osx-64/r-rbiom-1.0.3-r42h64b2c41_2.conda  1 year and 1 month ago 228 main
conda 400.6 kB | osx-arm64/r-rbiom-1.0.3-r42he96f11e_2.conda  1 year and 1 month ago 140 main
conda 400.9 kB | osx-arm64/r-rbiom-1.0.3-r43he96f11e_2.conda  1 year and 1 month ago 129 main
conda 293.6 kB | osx-64/r-rbiom-1.0.3-r43h64b2c41_2.conda  1 year and 1 month ago 253 main
conda 303.6 kB | win-64/r-rbiom-1.0.3-r41ha856d6a_2.conda  1 year and 6 months ago 344 main
conda 294.7 kB | osx-64/r-rbiom-1.0.3-r42hac7d2d5_2.conda  1 year and 6 months ago 159 main
conda 294.4 kB | osx-64/r-rbiom-1.0.3-r43hac7d2d5_2.conda  1 year and 6 months ago 149 main
conda 308.1 kB | linux-64/r-rbiom-1.0.3-r43ha503ecb_2.conda  1 year and 6 months ago 2753 main
conda 309.0 kB | linux-64/r-rbiom-1.0.3-r42ha503ecb_2.conda  1 year and 6 months ago 2486 main
conda 342.9 kB | win-64/r-rbiom-1.0.3-r41ha856d6a_1.tar.bz2  2 years and 2 months ago 535 main
conda 321.7 kB | osx-64/r-rbiom-1.0.3-r42h49197e3_1.tar.bz2  2 years and 2 months ago 93 main
conda 321.5 kB | osx-64/r-rbiom-1.0.3-r41h49197e3_1.tar.bz2  2 years and 2 months ago 82 main
conda 339.9 kB | linux-64/r-rbiom-1.0.3-r41h7525677_1.tar.bz2  2 years and 2 months ago 1685 main
conda 340.3 kB | linux-64/r-rbiom-1.0.3-r42h7525677_1.tar.bz2  2 years and 2 months ago 1674 main
conda 351.9 kB | win-64/r-rbiom-1.0.3-r40ha856d6a_0.tar.bz2  3 years and 2 months ago 743 main
conda 342.3 kB | win-64/r-rbiom-1.0.3-r41ha856d6a_0.tar.bz2  3 years and 2 months ago 709 main
conda 313.6 kB | osx-64/r-rbiom-1.0.3-r41h9951f98_0.tar.bz2  3 years and 2 months ago 86 main
conda 313.5 kB | osx-64/r-rbiom-1.0.3-r40h9951f98_0.tar.bz2  3 years and 2 months ago 96 main
conda 345.0 kB | linux-64/r-rbiom-1.0.3-r40h03ef668_0.tar.bz2  3 years and 2 months ago 2120 main
conda 345.2 kB | linux-64/r-rbiom-1.0.3-r41h03ef668_0.tar.bz2  3 years and 2 months ago 2053 main
conda 352.5 kB | win-64/r-rbiom-1.0.2-r40ha856d6a_0.tar.bz2  3 years and 3 months ago 722 main
conda 341.8 kB | win-64/r-rbiom-1.0.2-r41ha856d6a_0.tar.bz2  3 years and 3 months ago 745 main
conda 313.2 kB | osx-64/r-rbiom-1.0.2-r40h9951f98_0.tar.bz2  3 years and 3 months ago 90 main
conda 313.2 kB | osx-64/r-rbiom-1.0.2-r41h9951f98_0.tar.bz2  3 years and 3 months ago 92 main
conda 344.8 kB | linux-64/r-rbiom-1.0.2-r40h03ef668_0.tar.bz2  3 years and 3 months ago 2076 main
conda 344.9 kB | linux-64/r-rbiom-1.0.2-r41h03ef668_0.tar.bz2  3 years and 3 months ago 2084 main

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