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Analyzing and interactively exploring large-scale single-cell RNA-seq datasets. 'pagoda2' primarily performs normalization and differential gene expression analysis, with an interactive application for exploring single-cell RNA-seq datasets. It performs basic tasks such as cell size normalization, gene variance normalization, and can be used to identify subpopulations and run differential expression within individual samples. 'pagoda2' was written to rapidly process modern large-scale scRNAseq datasets of approximately 1e6 cells. The companion web application allows users to explore which gene expression patterns form the different subpopulations within your data. The package also serves as the primary method for preprocessing data for conos, <https://github.com/kharchenkolab/conos>. This package interacts with data available through the 'p2data' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/pagoda2>. The size of the 'p2data' package is approximately 6 MB.

copied from cf-staging / r-pagoda2
Type Size Name Uploaded Downloads Labels
conda 1.2 MB | osx-64/r-pagoda2-1.0.12-r43hfd06a21_0.conda  4 months and 28 days ago 211 main
conda 1.2 MB | win-64/r-pagoda2-1.0.12-r43h3dc9324_0.conda  4 months and 28 days ago 267 main
conda 1.2 MB | win-64/r-pagoda2-1.0.12-r44h3dc9324_0.conda  4 months and 28 days ago 267 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.12-r44hfd06a21_0.conda  4 months and 28 days ago 194 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.12-r43hb79369c_0.conda  4 months and 28 days ago 605 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.12-r44hb79369c_0.conda  4 months and 28 days ago 604 main
conda 1.2 MB | win-64/r-pagoda2-1.0.11-r44h3dc9324_1.conda  4 months and 29 days ago 271 main
conda 1.2 MB | win-64/r-pagoda2-1.0.11-r43h3dc9324_1.conda  4 months and 29 days ago 291 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.11-r43hfd06a21_1.conda  4 months and 29 days ago 200 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.11-r44hfd06a21_1.conda  4 months and 29 days ago 221 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.11-r44hb79369c_1.conda  4 months and 29 days ago 599 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.11-r43hb79369c_1.conda  4 months and 29 days ago 610 main
conda 1.2 MB | win-64/r-pagoda2-1.0.11-r41h78deb2a_0.conda  1 year and 7 months ago 581 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.11-r43he9b8800_0.conda  1 year and 7 months ago 392 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.11-r42he9b8800_0.conda  1 year and 7 months ago 415 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.11-r42h08d816e_0.conda  1 year and 7 months ago 1523 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.11-r43h08d816e_0.conda  1 year and 7 months ago 1552 main
conda 1.2 MB | win-64/r-pagoda2-1.0.10-r41h78deb2a_2.conda  1 year and 8 months ago 614 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.10-r43he9b8800_2.conda  1 year and 8 months ago 403 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.10-r42he9b8800_2.conda  1 year and 8 months ago 386 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.10-r43h08d816e_2.conda  1 year and 8 months ago 1569 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.10-r42h08d816e_2.conda  1 year and 8 months ago 1601 main
conda 1.3 MB | win-64/r-pagoda2-1.0.10-r41h78deb2a_1.tar.bz2  2 years and 5 months ago 539 main
conda 1.3 MB | osx-64/r-pagoda2-1.0.10-r42hf5e6a41_1.tar.bz2  2 years and 5 months ago 71 main
conda 1.3 MB | osx-64/r-pagoda2-1.0.10-r41hf5e6a41_1.tar.bz2  2 years and 5 months ago 73 main
conda 1.3 MB | linux-64/r-pagoda2-1.0.10-r42h9f5de39_1.tar.bz2  2 years and 5 months ago 1880 main
conda 1.3 MB | linux-64/r-pagoda2-1.0.10-r41h9f5de39_1.tar.bz2  2 years and 5 months ago 1794 main
conda 1.3 MB | win-64/r-pagoda2-1.0.10-r40h399f8d5_0.tar.bz2  2 years and 10 months ago 701 main
conda 1.2 MB | win-64/r-pagoda2-1.0.10-r41h399f8d5_0.tar.bz2  2 years and 10 months ago 703 main
conda 1.3 MB | osx-64/r-pagoda2-1.0.10-r41h11a1ea8_0.tar.bz2  2 years and 10 months ago 85 main
conda 1.3 MB | osx-64/r-pagoda2-1.0.10-r40h11a1ea8_0.tar.bz2  2 years and 10 months ago 84 main
conda 1.3 MB | linux-64/r-pagoda2-1.0.10-r41h43535f1_0.tar.bz2  2 years and 10 months ago 2126 main
conda 1.3 MB | linux-64/r-pagoda2-1.0.10-r40h43535f1_0.tar.bz2  2 years and 10 months ago 2140 main

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