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Analyzing and interactively exploring large-scale single-cell RNA-seq datasets. 'pagoda2' primarily performs normalization and differential gene expression analysis, with an interactive application for exploring single-cell RNA-seq datasets. It performs basic tasks such as cell size normalization, gene variance normalization, and can be used to identify subpopulations and run differential expression within individual samples. 'pagoda2' was written to rapidly process modern large-scale scRNAseq datasets of approximately 1e6 cells. The companion web application allows users to explore which gene expression patterns form the different subpopulations within your data. The package also serves as the primary method for preprocessing data for conos, <https://github.com/kharchenkolab/conos>. This package interacts with data available through the 'p2data' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/pagoda2>. The size of the 'p2data' package is approximately 6 MB.

copied from cf-staging / r-pagoda2
Type Size Name Uploaded Downloads Labels
conda 1.2 MB | osx-64/r-pagoda2-1.0.12-r43hfd06a21_0.conda  4 months and 21 days ago 209 main
conda 1.2 MB | win-64/r-pagoda2-1.0.12-r43h3dc9324_0.conda  4 months and 21 days ago 264 main
conda 1.2 MB | win-64/r-pagoda2-1.0.12-r44h3dc9324_0.conda  4 months and 21 days ago 265 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.12-r44hfd06a21_0.conda  4 months and 21 days ago 191 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.12-r43hb79369c_0.conda  4 months and 21 days ago 587 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.12-r44hb79369c_0.conda  4 months and 21 days ago 583 main
conda 1.2 MB | win-64/r-pagoda2-1.0.11-r44h3dc9324_1.conda  4 months and 21 days ago 268 main
conda 1.2 MB | win-64/r-pagoda2-1.0.11-r43h3dc9324_1.conda  4 months and 21 days ago 289 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.11-r43hfd06a21_1.conda  4 months and 21 days ago 198 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.11-r44hfd06a21_1.conda  4 months and 21 days ago 219 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.11-r44hb79369c_1.conda  4 months and 21 days ago 581 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.11-r43hb79369c_1.conda  4 months and 21 days ago 592 main
conda 1.2 MB | win-64/r-pagoda2-1.0.11-r41h78deb2a_0.conda  1 year and 7 months ago 581 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.11-r43he9b8800_0.conda  1 year and 7 months ago 391 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.11-r42he9b8800_0.conda  1 year and 7 months ago 415 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.11-r42h08d816e_0.conda  1 year and 7 months ago 1506 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.11-r43h08d816e_0.conda  1 year and 7 months ago 1534 main
conda 1.2 MB | win-64/r-pagoda2-1.0.10-r41h78deb2a_2.conda  1 year and 8 months ago 614 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.10-r43he9b8800_2.conda  1 year and 8 months ago 403 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.10-r42he9b8800_2.conda  1 year and 8 months ago 386 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.10-r43h08d816e_2.conda  1 year and 8 months ago 1554 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.10-r42h08d816e_2.conda  1 year and 8 months ago 1582 main
conda 1.3 MB | win-64/r-pagoda2-1.0.10-r41h78deb2a_1.tar.bz2  2 years and 5 months ago 539 main
conda 1.3 MB | osx-64/r-pagoda2-1.0.10-r42hf5e6a41_1.tar.bz2  2 years and 5 months ago 71 main
conda 1.3 MB | osx-64/r-pagoda2-1.0.10-r41hf5e6a41_1.tar.bz2  2 years and 5 months ago 73 main
conda 1.3 MB | linux-64/r-pagoda2-1.0.10-r42h9f5de39_1.tar.bz2  2 years and 5 months ago 1860 main
conda 1.3 MB | linux-64/r-pagoda2-1.0.10-r41h9f5de39_1.tar.bz2  2 years and 5 months ago 1775 main
conda 1.3 MB | win-64/r-pagoda2-1.0.10-r40h399f8d5_0.tar.bz2  2 years and 9 months ago 700 main
conda 1.2 MB | win-64/r-pagoda2-1.0.10-r41h399f8d5_0.tar.bz2  2 years and 9 months ago 703 main
conda 1.3 MB | osx-64/r-pagoda2-1.0.10-r41h11a1ea8_0.tar.bz2  2 years and 9 months ago 85 main
conda 1.3 MB | osx-64/r-pagoda2-1.0.10-r40h11a1ea8_0.tar.bz2  2 years and 9 months ago 84 main
conda 1.3 MB | linux-64/r-pagoda2-1.0.10-r41h43535f1_0.tar.bz2  2 years and 9 months ago 2106 main
conda 1.3 MB | linux-64/r-pagoda2-1.0.10-r40h43535f1_0.tar.bz2  2 years and 9 months ago 2123 main

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