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Analyzing and interactively exploring large-scale single-cell RNA-seq datasets. 'pagoda2' primarily performs normalization and differential gene expression analysis, with an interactive application for exploring single-cell RNA-seq datasets. It performs basic tasks such as cell size normalization, gene variance normalization, and can be used to identify subpopulations and run differential expression within individual samples. 'pagoda2' was written to rapidly process modern large-scale scRNAseq datasets of approximately 1e6 cells. The companion web application allows users to explore which gene expression patterns form the different subpopulations within your data. The package also serves as the primary method for preprocessing data for conos, <https://github.com/kharchenkolab/conos>. This package interacts with data available through the 'p2data' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/pagoda2>. The size of the 'p2data' package is approximately 6 MB.

copied from cf-staging / r-pagoda2
Type Size Name Uploaded Downloads Labels
conda 1.2 MB | osx-64/r-pagoda2-1.0.12-r43hfd06a21_0.conda  4 months and 3 days ago 208 main
conda 1.2 MB | win-64/r-pagoda2-1.0.12-r43h3dc9324_0.conda  4 months and 3 days ago 262 main
conda 1.2 MB | win-64/r-pagoda2-1.0.12-r44h3dc9324_0.conda  4 months and 3 days ago 263 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.12-r44hfd06a21_0.conda  4 months and 3 days ago 190 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.12-r43hb79369c_0.conda  4 months and 3 days ago 546 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.12-r44hb79369c_0.conda  4 months and 3 days ago 538 main
conda 1.2 MB | win-64/r-pagoda2-1.0.11-r44h3dc9324_1.conda  4 months and 3 days ago 266 main
conda 1.2 MB | win-64/r-pagoda2-1.0.11-r43h3dc9324_1.conda  4 months and 3 days ago 287 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.11-r43hfd06a21_1.conda  4 months and 3 days ago 198 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.11-r44hfd06a21_1.conda  4 months and 3 days ago 217 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.11-r44hb79369c_1.conda  4 months and 3 days ago 541 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.11-r43hb79369c_1.conda  4 months and 3 days ago 549 main
conda 1.2 MB | win-64/r-pagoda2-1.0.11-r41h78deb2a_0.conda  1 year and 6 months ago 579 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.11-r43he9b8800_0.conda  1 year and 6 months ago 391 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.11-r42he9b8800_0.conda  1 year and 6 months ago 414 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.11-r42h08d816e_0.conda  1 year and 6 months ago 1465 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.11-r43h08d816e_0.conda  1 year and 6 months ago 1496 main
conda 1.2 MB | win-64/r-pagoda2-1.0.10-r41h78deb2a_2.conda  1 year and 8 months ago 613 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.10-r43he9b8800_2.conda  1 year and 8 months ago 402 main
conda 1.2 MB | osx-64/r-pagoda2-1.0.10-r42he9b8800_2.conda  1 year and 8 months ago 386 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.10-r43h08d816e_2.conda  1 year and 8 months ago 1516 main
conda 1.2 MB | linux-64/r-pagoda2-1.0.10-r42h08d816e_2.conda  1 year and 8 months ago 1546 main
conda 1.3 MB | win-64/r-pagoda2-1.0.10-r41h78deb2a_1.tar.bz2  2 years and 4 months ago 538 main
conda 1.3 MB | osx-64/r-pagoda2-1.0.10-r42hf5e6a41_1.tar.bz2  2 years and 4 months ago 71 main
conda 1.3 MB | osx-64/r-pagoda2-1.0.10-r41hf5e6a41_1.tar.bz2  2 years and 4 months ago 73 main
conda 1.3 MB | linux-64/r-pagoda2-1.0.10-r42h9f5de39_1.tar.bz2  2 years and 4 months ago 1819 main
conda 1.3 MB | linux-64/r-pagoda2-1.0.10-r41h9f5de39_1.tar.bz2  2 years and 4 months ago 1741 main
conda 1.3 MB | win-64/r-pagoda2-1.0.10-r40h399f8d5_0.tar.bz2  2 years and 9 months ago 699 main
conda 1.2 MB | win-64/r-pagoda2-1.0.10-r41h399f8d5_0.tar.bz2  2 years and 9 months ago 702 main
conda 1.3 MB | osx-64/r-pagoda2-1.0.10-r41h11a1ea8_0.tar.bz2  2 years and 9 months ago 85 main
conda 1.3 MB | osx-64/r-pagoda2-1.0.10-r40h11a1ea8_0.tar.bz2  2 years and 9 months ago 84 main
conda 1.3 MB | linux-64/r-pagoda2-1.0.10-r41h43535f1_0.tar.bz2  2 years and 9 months ago 2070 main
conda 1.3 MB | linux-64/r-pagoda2-1.0.10-r40h43535f1_0.tar.bz2  2 years and 9 months ago 2082 main

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