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Multivariate methods are well suited to large omics data sets where the number of variables (e.g. genes, proteins, metabolites) is much larger than the number of samples (patients, cells, mice). They have the appealing properties of reducing the dimension of the data by using instrumental variables (components), which are defined as combinations of all variables. Those components are then used to produce useful graphical outputs that enable better understanding of the relationships and correlation structures between the different data sets that are integrated. mixOmics offers a wide range of multivariate methods for the exploration and integration of biological datasets with a particular focus on variable selection. The package proposes several sparse multivariate models we have developed to identify the key variables that are highly correlated, and/or explain the biological outcome of interest. The data that can be analysed with mixOmics may come from high throughput sequencing technologies, such as omics data (transcriptomics, metabolomics, proteomics, metagenomics etc) but also beyond the realm of omics (e.g. spectral imaging). The methods implemented in mixOmics can also handle missing values without having to delete entire rows with missing data. A non exhaustive list of methods include variants of generalised Canonical Correlation Analysis, sparse Partial Least Squares and sparse Discriminant Analysis. Recently we implemented integrative methods to combine multiple data sets: N-integration with variants of Generalised Canonical Correlation Analysis and P-integration with variants of multi-group Partial Least Squares.

copied from cf-staging / r-mixomics
Type Size Name Uploaded Downloads Labels
conda 5.4 MB | win-64/r-mixomics-6.3.2-r43h6addd8b_7.conda  4 months and 1 day ago 204 main
conda 5.4 MB | win-64/r-mixomics-6.3.2-r44h6addd8b_7.conda  4 months and 1 day ago 201 main
conda 5.4 MB | linux-64/r-mixomics-6.3.2-r44hc72bb7e_7.conda  4 months and 1 day ago 527 main
conda 5.4 MB | linux-64/r-mixomics-6.3.2-r43hc72bb7e_7.conda  4 months and 1 day ago 622 main
conda 5.4 MB | win-64/r-mixomics-6.3.2-r41h6addd8b_6.conda  1 year and 5 months ago 364 main
conda 5.4 MB | linux-64/r-mixomics-6.3.2-r42hc72bb7e_6.conda  1 year and 5 months ago 1441 main
conda 5.4 MB | linux-64/r-mixomics-6.3.2-r43hc72bb7e_6.conda  1 year and 5 months ago 3333 main
conda 5.6 MB | win-64/r-mixomics-6.3.2-r41h6addd8b_5.tar.bz2  2 years and 1 month ago 565 main
conda 5.6 MB | linux-64/r-mixomics-6.3.2-r42hc72bb7e_5.tar.bz2  2 years and 1 month ago 1651 main
conda 5.6 MB | linux-64/r-mixomics-6.3.2-r41hc72bb7e_5.tar.bz2  2 years and 1 month ago 1586 main
conda 5.6 MB | win-64/r-mixomics-6.3.2-r41h6addd8b_4.tar.bz2  3 years and 6 months ago 813 main
conda 5.7 MB | win-64/r-mixomics-6.3.2-r40h6addd8b_4.tar.bz2  3 years and 6 months ago 796 main
conda 5.6 MB | linux-64/r-mixomics-6.3.2-r41hc72bb7e_4.tar.bz2  3 years and 6 months ago 2638 main
conda 5.6 MB | linux-64/r-mixomics-6.3.2-r40hc72bb7e_4.tar.bz2  3 years and 6 months ago 2232 main
conda 5.7 MB | win-64/r-mixomics-6.3.2-r40h6115d3f_4.tar.bz2  4 years and 2 months ago 1006 main
conda 5.7 MB | win-64/r-mixomics-6.3.2-r36h6115d3f_4.tar.bz2  4 years and 2 months ago 1019 main
conda 5.6 MB | linux-64/r-mixomics-6.3.2-r40h6115d3f_4.tar.bz2  4 years and 2 months ago 2580 main
conda 5.6 MB | linux-64/r-mixomics-6.3.2-r36h6115d3f_4.tar.bz2  4 years and 2 months ago 2823 main
conda 5.6 MB | win-64/r-mixomics-6.3.2-r35h6115d3f_2.tar.bz2  5 years and 4 months ago 1398 main cf202003
conda 5.7 MB | win-64/r-mixomics-6.3.2-r36h6115d3f_2.tar.bz2  5 years and 4 months ago 1399 main cf202003
conda 5.6 MB | linux-64/r-mixomics-6.3.2-r35h6115d3f_2.tar.bz2  5 years and 4 months ago 3741 main cf202003
conda 5.6 MB | linux-64/r-mixomics-6.3.2-r36h6115d3f_2.tar.bz2  5 years and 4 months ago 3829 main cf202003
conda 5.6 MB | win-64/r-mixomics-6.3.2-r351h6115d3f_1.tar.bz2  6 years and 1 month ago 1708 main cf202003 cf201901
conda 4.9 MB | win-64/r-mixomics-6.3.2-r341h6115d3f_1.tar.bz2  6 years and 1 month ago 1696 main cf202003 cf201901
conda 5.6 MB | linux-64/r-mixomics-6.3.2-r351h6115d3f_1.tar.bz2  6 years and 1 month ago 4531 main cf202003 cf201901
conda 4.8 MB | linux-64/r-mixomics-6.3.2-r341h6115d3f_1.tar.bz2  6 years and 1 month ago 4463 main cf202003 cf201901
conda 4.9 MB | win-64/r-mixomics-6.3.2-r341h6115d3f_0.tar.bz2  6 years and 3 months ago 1783 main cf202003 cf201901
conda 4.8 MB | linux-64/r-mixomics-6.3.2-r341h6115d3f_0.tar.bz2  6 years and 3 months ago 4586 main cf202003 cf201901
conda 4.8 MB | linux-64/r-mixomics-6.3.1-r3.4.1_0.tar.bz2  6 years and 9 months ago 4760 main cf202003 cf201901
conda 4.8 MB | linux-64/r-mixomics-6.3.1-r3.3.2_0.tar.bz2  6 years and 9 months ago 4728 main cf202003 cf201901

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