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A suite of methods for powerful and robust microbiome data analysis including data normalization, data simulation, community-level association testing and differential abundance analysis. It implements generalized UniFrac distances, Geometric Mean of Pairwise Ratios (GMPR) normalization, semiparametric data simulator, distance-based statistical methods, and feature-based statistical methods. The distance-based statistical methods include three extensions of PERMANOVA: (1) PERMANOVA using the Freedman-Lane permutation scheme, (2) PERMANOVA omnibus test using multiple matrices, and (3) analytical approach to approximating PERMANOVA p-value. Feature-based statistical methods include linear model-based permutation tests for differential abundance analysis of zero-inflated compositional data.

copied from cf-staging / r-gunifrac
Type Size Name Uploaded Downloads Labels
conda 1.0 MB | win-64/r-gunifrac-1.8-r44h8ae3a7c_1.conda  8 months and 1 day ago 414 main
conda 1.0 MB | win-64/r-gunifrac-1.8-r43h8ae3a7c_1.conda  8 months and 1 day ago 416 main
conda 1.0 MB | osx-arm64/r-gunifrac-1.8-r43hd76f289_1.conda  8 months and 1 day ago 336 main
conda 1.0 MB | osx-arm64/r-gunifrac-1.8-r44hd76f289_1.conda  8 months and 1 day ago 313 main
conda 1.0 MB | osx-64/r-gunifrac-1.8-r44h25d921d_1.conda  8 months and 1 day ago 327 main
conda 1.0 MB | osx-64/r-gunifrac-1.8-r43h25d921d_1.conda  8 months and 1 day ago 340 main
conda 1.0 MB | linux-64/r-gunifrac-1.8-r43h0d4f4ea_1.conda  8 months and 1 day ago 907 main
conda 1.0 MB | linux-64/r-gunifrac-1.8-r44h0d4f4ea_1.conda  8 months and 1 day ago 893 main
conda 1.0 MB | win-64/r-gunifrac-1.8-r41ha856d6a_0.conda  1 year and 6 months ago 550 main
conda 1.0 MB | osx-64/r-gunifrac-1.8-r42hac7d2d5_0.conda  1 year and 6 months ago 368 main
conda 1.0 MB | osx-arm64/r-gunifrac-1.8-r42he62749d_0.conda  1 year and 6 months ago 341 main
conda 1.0 MB | osx-arm64/r-gunifrac-1.8-r43he62749d_0.conda  1 year and 6 months ago 355 main
conda 1.0 MB | osx-64/r-gunifrac-1.8-r43hac7d2d5_0.conda  1 year and 6 months ago 358 main
conda 1.0 MB | linux-64/r-gunifrac-1.8-r43ha503ecb_0.conda  1 year and 6 months ago 1521 main
conda 1.0 MB | linux-64/r-gunifrac-1.8-r42ha503ecb_0.conda  1 year and 6 months ago 1483 main

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