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Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, <doi:10.1093/bioinformatics/bty300>.

copied from cf-staging / r-ggrasp
Type Size Name Uploaded Downloads Labels
conda 889.5 kB | noarch/r-ggrasp-1.2-r44hc72bb7e_3.conda  7 months and 1 day ago 603 main
conda 885.0 kB | noarch/r-ggrasp-1.2-r43hc72bb7e_3.conda  7 months and 1 day ago 600 main
conda 889.8 kB | noarch/r-ggrasp-1.2-r43hc72bb7e_2.conda  1 year and 8 months ago 1133 main
conda 880.3 kB | noarch/r-ggrasp-1.2-r42hc72bb7e_2.conda  1 year and 8 months ago 1170 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r42hc72bb7e_1.tar.bz2  2 years and 5 months ago 1428 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r41hc72bb7e_1.tar.bz2  2 years and 5 months ago 1439 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r40hc72bb7e_0.tar.bz2  2 years and 11 months ago 2035 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r41hc72bb7e_0.tar.bz2  2 years and 11 months ago 2025 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r40hc72bb7e_1.tar.bz2  3 years and 10 months ago 2118 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r41hc72bb7e_1.tar.bz2  3 years and 10 months ago 2111 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r40h6115d3f_1.tar.bz2  4 years and 10 months ago 2958 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r36h6115d3f_1.tar.bz2  4 years and 10 months ago 2956 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r36h6115d3f_0.tar.bz2  5 years and 5 months ago 3663 main cf202003
conda 1.2 MB | noarch/r-ggrasp-1.0-r35h6115d3f_0.tar.bz2  5 years and 5 months ago 3675 main cf202003

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