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Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, <doi:10.1093/bioinformatics/bty300>.

copied from cf-post-staging / r-ggrasp
Type Size Name Uploaded Downloads Labels
conda 889.2 kB | noarch/r-ggrasp-1.2-r44hc72bb7e_4.conda  10 hours and 6 minutes ago 15 main
conda 890.7 kB | noarch/r-ggrasp-1.2-r45hc72bb7e_4.conda  10 hours and 8 minutes ago 19 main
conda 889.5 kB | noarch/r-ggrasp-1.2-r44hc72bb7e_3.conda  1 year and 26 days ago 948 main
conda 885.0 kB | noarch/r-ggrasp-1.2-r43hc72bb7e_3.conda  1 year and 26 days ago 927 main
conda 889.8 kB | noarch/r-ggrasp-1.2-r43hc72bb7e_2.conda  2 years and 2 months ago 1449 main
conda 880.3 kB | noarch/r-ggrasp-1.2-r42hc72bb7e_2.conda  2 years and 2 months ago 1515 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r42hc72bb7e_1.tar.bz2  2 years and 11 months ago 1752 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r41hc72bb7e_1.tar.bz2  2 years and 11 months ago 1756 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r40hc72bb7e_0.tar.bz2  3 years and 5 months ago 2355 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r41hc72bb7e_0.tar.bz2  3 years and 5 months ago 2336 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r40hc72bb7e_1.tar.bz2  4 years and 3 months ago 2450 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r41hc72bb7e_1.tar.bz2  4 years and 3 months ago 2446 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r40h6115d3f_1.tar.bz2  5 years and 4 months ago 3287 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r36h6115d3f_1.tar.bz2  5 years and 4 months ago 3283 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r36h6115d3f_0.tar.bz2  5 years and 11 months ago 4009 main cf202003
conda 1.2 MB | noarch/r-ggrasp-1.0-r35h6115d3f_0.tar.bz2  5 years and 11 months ago 4016 main cf202003

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