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Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, <doi:10.1093/bioinformatics/bty300>.

copied from cf-post-staging / r-ggrasp
Type Size Name Uploaded Downloads Labels
conda 889.2 kB | noarch/r-ggrasp-1.2-r44hc72bb7e_4.conda  5 days and 18 hours ago 36 main
conda 890.7 kB | noarch/r-ggrasp-1.2-r45hc72bb7e_4.conda  5 days and 18 hours ago 40 main
conda 889.5 kB | noarch/r-ggrasp-1.2-r44hc72bb7e_3.conda  1 year and 1 month ago 957 main
conda 885.0 kB | noarch/r-ggrasp-1.2-r43hc72bb7e_3.conda  1 year and 1 month ago 936 main
conda 889.8 kB | noarch/r-ggrasp-1.2-r43hc72bb7e_2.conda  2 years and 2 months ago 1456 main
conda 880.3 kB | noarch/r-ggrasp-1.2-r42hc72bb7e_2.conda  2 years and 2 months ago 1525 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r42hc72bb7e_1.tar.bz2  2 years and 11 months ago 1761 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r41hc72bb7e_1.tar.bz2  2 years and 11 months ago 1765 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r40hc72bb7e_0.tar.bz2  3 years and 5 months ago 2363 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r41hc72bb7e_0.tar.bz2  3 years and 5 months ago 2346 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r40hc72bb7e_1.tar.bz2  4 years and 4 months ago 2458 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r41hc72bb7e_1.tar.bz2  4 years and 4 months ago 2456 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r40h6115d3f_1.tar.bz2  5 years and 4 months ago 3295 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r36h6115d3f_1.tar.bz2  5 years and 4 months ago 3292 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r36h6115d3f_0.tar.bz2  5 years and 11 months ago 4019 main cf202003
conda 1.2 MB | noarch/r-ggrasp-1.0-r35h6115d3f_0.tar.bz2  5 years and 11 months ago 4024 main cf202003

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