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Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, <doi:10.1093/bioinformatics/bty300>.

copied from cf-post-staging / r-ggrasp
Type Size Name Uploaded Downloads Labels
conda 889.2 kB | noarch/r-ggrasp-1.2-r44hc72bb7e_4.conda  7 months and 28 days ago 471 main
conda 890.7 kB | noarch/r-ggrasp-1.2-r45hc72bb7e_4.conda  7 months and 28 days ago 471 main
conda 889.5 kB | noarch/r-ggrasp-1.2-r44hc72bb7e_3.conda  1 year and 8 months ago 1365 main
conda 885.0 kB | noarch/r-ggrasp-1.2-r43hc72bb7e_3.conda  1 year and 8 months ago 1344 main
conda 889.8 kB | noarch/r-ggrasp-1.2-r43hc72bb7e_2.conda  2 years and 10 months ago 1825 main
conda 880.3 kB | noarch/r-ggrasp-1.2-r42hc72bb7e_2.conda  2 years and 10 months ago 1910 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r42hc72bb7e_1.tar.bz2  3 years and 7 months ago 2156 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r41hc72bb7e_1.tar.bz2  3 years and 7 months ago 2143 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r40hc72bb7e_0.tar.bz2  4 years and 29 days ago 2746 main
conda 1.3 MB | noarch/r-ggrasp-1.2-r41hc72bb7e_0.tar.bz2  4 years and 29 days ago 2732 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r40hc72bb7e_1.tar.bz2  4 years and 11 months ago 2837 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r41hc72bb7e_1.tar.bz2  4 years and 11 months ago 2837 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r40h6115d3f_1.tar.bz2  6 years and 14 days ago 3684 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r36h6115d3f_1.tar.bz2  6 years and 14 days ago 3677 main
conda 1.3 MB | noarch/r-ggrasp-1.0-r36h6115d3f_0.tar.bz2  6 years and 7 months ago 4429 main cf202003
conda 1.2 MB | noarch/r-ggrasp-1.0-r35h6115d3f_0.tar.bz2  6 years and 7 months ago 4411 main cf202003

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