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Provides an implementation of the framework of reversed graph embedding (RGE) which projects data into a reduced dimensional space while constructs a principal tree which passes through the middle of the data simultaneously. DDRTree shows superiority to alternatives (Wishbone, DPT) for inferring the ordering as well as the intrinsic structure of the single cell genomics data. In general, it could be used to reconstruct the temporal progression as well as bifurcation structure of any datatype.

copied from cf-staging / r-ddrtree
Type Size Name Uploaded Downloads Labels
conda 176.0 kB | win-64/r-ddrtree-0.1.5-r43h8ae3a7c_1007.conda  6 months and 5 days ago 131 main
conda 176.5 kB | win-64/r-ddrtree-0.1.5-r44h8ae3a7c_1007.conda  6 months and 5 days ago 157 main
conda 204.4 kB | osx-64/r-ddrtree-0.1.5-r43h25d921d_1007.conda  6 months and 5 days ago 133 main
conda 245.3 kB | linux-ppc64le/r-ddrtree-0.1.5-r44h4f8ea88_1007.conda  6 months and 5 days ago 55 main
conda 205.6 kB | osx-64/r-ddrtree-0.1.5-r44h25d921d_1007.conda  6 months and 5 days ago 131 main
conda 244.2 kB | linux-ppc64le/r-ddrtree-0.1.5-r43h4f8ea88_1007.conda  6 months and 5 days ago 62 main
conda 193.1 kB | linux-aarch64/r-ddrtree-0.1.5-r43h7d3bd7d_1007.conda  6 months and 5 days ago 85 main
conda 193.9 kB | linux-aarch64/r-ddrtree-0.1.5-r44h7d3bd7d_1007.conda  6 months and 5 days ago 89 main
conda 203.5 kB | linux-64/r-ddrtree-0.1.5-r44h0d4f4ea_1007.conda  6 months and 5 days ago 756 main
conda 202.5 kB | linux-64/r-ddrtree-0.1.5-r43h0d4f4ea_1007.conda  6 months and 5 days ago 998 main
conda 205.4 kB | linux-ppc64le/r-ddrtree-0.1.5-r42h46f38da_1006.conda  1 year and 5 months ago 66 main
conda 205.9 kB | linux-ppc64le/r-ddrtree-0.1.5-r43h46f38da_1006.conda  1 year and 5 months ago 77 main
conda 174.5 kB | linux-aarch64/r-ddrtree-0.1.5-r42h2f0025b_1006.conda  1 year and 5 months ago 84 main
conda 175.0 kB | linux-aarch64/r-ddrtree-0.1.5-r43h2f0025b_1006.conda  1 year and 5 months ago 89 main
conda 150.7 kB | win-64/r-ddrtree-0.1.5-r41hfa435f1_1006.conda  1 year and 7 months ago 362 main
conda 203.5 kB | osx-64/r-ddrtree-0.1.5-r42he965462_1006.conda  1 year and 7 months ago 161 main
conda 203.2 kB | osx-64/r-ddrtree-0.1.5-r43he965462_1006.conda  1 year and 7 months ago 160 main
conda 183.7 kB | linux-64/r-ddrtree-0.1.5-r43h59595ed_1006.conda  1 year and 7 months ago 1764 main
conda 184.2 kB | linux-64/r-ddrtree-0.1.5-r42h59595ed_1006.conda  1 year and 7 months ago 1410 main
conda 164.6 kB | win-64/r-ddrtree-0.1.5-r41hfa435f1_1005.tar.bz2  2 years and 3 months ago 539 main
conda 225.0 kB | osx-64/r-ddrtree-0.1.5-r42hf0c8a7f_1005.tar.bz2  2 years and 3 months ago 89 main
conda 224.9 kB | osx-64/r-ddrtree-0.1.5-r41hf0c8a7f_1005.tar.bz2  2 years and 3 months ago 90 main
conda 195.9 kB | linux-64/r-ddrtree-0.1.5-r41h27087fc_1005.tar.bz2  2 years and 3 months ago 2174 main
conda 196.2 kB | linux-64/r-ddrtree-0.1.5-r42h27087fc_1005.tar.bz2  2 years and 3 months ago 1908 main
conda 166.9 kB | win-64/r-ddrtree-0.1.5-r40hfa435f1_1004.tar.bz2  3 years and 7 months ago 802 main
conda 162.3 kB | win-64/r-ddrtree-0.1.5-r41hfa435f1_1004.tar.bz2  3 years and 7 months ago 805 main
conda 201.8 kB | osx-64/r-ddrtree-0.1.5-r41he49afe7_1004.tar.bz2  3 years and 7 months ago 185 main
conda 201.8 kB | osx-64/r-ddrtree-0.1.5-r40he49afe7_1004.tar.bz2  3 years and 7 months ago 193 main
conda 196.2 kB | linux-64/r-ddrtree-0.1.5-r41h9c3ff4c_1004.tar.bz2  3 years and 7 months ago 2812 main
conda 196.2 kB | linux-64/r-ddrtree-0.1.5-r40h9c3ff4c_1004.tar.bz2  3 years and 7 months ago 3300 main
conda 167.6 kB | win-64/r-ddrtree-0.1.5-r36hca4a3dc_1004.tar.bz2  4 years and 8 months ago 1038 main
conda 167.5 kB | win-64/r-ddrtree-0.1.5-r40hca4a3dc_1004.tar.bz2  4 years and 8 months ago 1036 main
conda 207.9 kB | osx-64/r-ddrtree-0.1.5-r40h4a8c4bd_1004.tar.bz2  4 years and 8 months ago 364 main
conda 208.1 kB | osx-64/r-ddrtree-0.1.5-r36h4a8c4bd_1004.tar.bz2  4 years and 8 months ago 355 main
conda 182.7 kB | linux-64/r-ddrtree-0.1.5-r40he1b5a44_1004.tar.bz2  4 years and 8 months ago 3600 main
conda 182.8 kB | linux-64/r-ddrtree-0.1.5-r36he1b5a44_1004.tar.bz2  4 years and 8 months ago 3164 main
conda 163.4 kB | win-64/r-ddrtree-0.1.5-r36hca4a3dc_1003.tar.bz2  5 years and 6 months ago 1377 main cf202003
conda 162.9 kB | win-64/r-ddrtree-0.1.5-r35hca4a3dc_1003.tar.bz2  5 years and 6 months ago 1372 main cf202003
conda 206.7 kB | osx-64/r-ddrtree-0.1.5-r36h6de7cb9_1003.tar.bz2  5 years and 6 months ago 392 main cf202003
conda 593.4 kB | osx-64/r-ddrtree-0.1.5-r35h6de7cb9_1003.tar.bz2  5 years and 6 months ago 973 main cf202003
conda 176.9 kB | linux-64/r-ddrtree-0.1.5-r35he1b5a44_1003.tar.bz2  5 years and 6 months ago 5087 main cf202003
conda 177.2 kB | linux-64/r-ddrtree-0.1.5-r36he1b5a44_1003.tar.bz2  5 years and 6 months ago 4010 main cf202003
conda 176.9 kB | linux-64/r-ddrtree-0.1.5-r351hf484d3e_1002.tar.bz2  6 years and 1 month ago 4651 main gcc7 cf202003
conda 205.6 kB | osx-64/r-ddrtree-0.1.5-r351h0a44026_1002.tar.bz2  6 years and 1 month ago 415 main gcc7 cf202003
conda 163.6 kB | win-64/r-ddrtree-0.1.5-r351hca4a3dc_1002.tar.bz2  6 years and 1 month ago 1633 main cf202003 cf201901
conda 163.2 kB | win-64/r-ddrtree-0.1.5-r351hca4a3dc_2.tar.bz2  6 years and 3 months ago 1692 main cf202003 cf201901
conda 158.7 kB | win-64/r-ddrtree-0.1.5-r341hca4a3dc_2.tar.bz2  6 years and 3 months ago 1694 main cf202003 cf201901
conda 1.0 MB | linux-64/r-ddrtree-0.1.5-r341hfc679d8_2.tar.bz2  6 years and 3 months ago 4628 main cf202003 cf201901
conda 514.0 kB | osx-64/r-ddrtree-0.1.5-r351hfc679d8_2.tar.bz2  6 years and 3 months ago 356 main cf202003 cf201901
conda 1.0 MB | linux-64/r-ddrtree-0.1.5-r351hfc679d8_2.tar.bz2  6 years and 3 months ago 4589 main cf202003 cf201901

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