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Is designed to test for association between methylation at CpG sites across the genome and a phenotype of interest, adjusting for any relevant covariates. The package can perform standard analyses of large datasets very quickly with no need to impute the data. It can also handle mixed effects models with chip or batch entering the model as a random intercept. Also includes tools to apply quality control filters, perform permutation tests, and create QQ plots, manhattan plots, and scatterplots for individual CpG sites.

copied from cf-staging / r-cpgassoc
Type Size Name Uploaded Downloads Labels
conda 1.9 MB | noarch/r-cpgassoc-2.70-r44hc72bb7e_0.conda  8 months and 13 hours ago 625 main
conda 1.9 MB | noarch/r-cpgassoc-2.70-r43hc72bb7e_0.conda  8 months and 13 hours ago 630 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r44hc72bb7e_3.conda  8 months and 2 days ago 624 main
conda 1.8 MB | noarch/r-cpgassoc-2.60-r43hc72bb7e_3.conda  8 months and 2 days ago 611 main
conda 1.8 MB | noarch/r-cpgassoc-2.60-r43hc72bb7e_2.conda  1 year and 8 months ago 1066 main
conda 1.8 MB | noarch/r-cpgassoc-2.60-r42hc72bb7e_2.conda  1 year and 8 months ago 1079 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r42hc72bb7e_1.tar.bz2  2 years and 5 months ago 1458 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r41hc72bb7e_1.tar.bz2  2 years and 5 months ago 1463 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r41hc72bb7e_0.tar.bz2  3 years and 9 months ago 2136 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r40hc72bb7e_0.tar.bz2  3 years and 9 months ago 2111 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r40h6115d3f_0.tar.bz2  4 years and 9 months ago 2938 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r36h6115d3f_1.tar.bz2  4 years and 10 months ago 3118 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r40h6115d3f_1.tar.bz2  4 years and 10 months ago 3046 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r36h6115d3f_0.tar.bz2  4 years and 10 months ago 2965 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r35h6115d3f_0.tar.bz2  4 years and 10 months ago 2924 main

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