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Is designed to test for association between methylation at CpG sites across the genome and a phenotype of interest, adjusting for any relevant covariates. The package can perform standard analyses of large datasets very quickly with no need to impute the data. It can also handle mixed effects models with chip or batch entering the model as a random intercept. Also includes tools to apply quality control filters, perform permutation tests, and create QQ plots, manhattan plots, and scatterplots for individual CpG sites.

copied from cf-staging / r-cpgassoc
Type Size Name Uploaded Downloads Labels
conda 1.9 MB | noarch/r-cpgassoc-2.70-r44hc72bb7e_0.conda  7 months and 14 days ago 594 main
conda 1.9 MB | noarch/r-cpgassoc-2.70-r43hc72bb7e_0.conda  7 months and 14 days ago 597 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r44hc72bb7e_3.conda  7 months and 15 days ago 595 main
conda 1.8 MB | noarch/r-cpgassoc-2.60-r43hc72bb7e_3.conda  7 months and 15 days ago 585 main
conda 1.8 MB | noarch/r-cpgassoc-2.60-r43hc72bb7e_2.conda  1 year and 8 months ago 1044 main
conda 1.8 MB | noarch/r-cpgassoc-2.60-r42hc72bb7e_2.conda  1 year and 8 months ago 1056 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r42hc72bb7e_1.tar.bz2  2 years and 4 months ago 1430 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r41hc72bb7e_1.tar.bz2  2 years and 4 months ago 1434 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r41hc72bb7e_0.tar.bz2  3 years and 9 months ago 2110 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r40hc72bb7e_0.tar.bz2  3 years and 9 months ago 2082 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r40h6115d3f_0.tar.bz2  4 years and 8 months ago 2909 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r36h6115d3f_1.tar.bz2  4 years and 9 months ago 3091 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r40h6115d3f_1.tar.bz2  4 years and 9 months ago 3021 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r36h6115d3f_0.tar.bz2  4 years and 9 months ago 2937 main
conda 1.9 MB | noarch/r-cpgassoc-2.60-r35h6115d3f_0.tar.bz2  4 years and 9 months ago 2898 main

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