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conda-forge / packages / r-cooccur

This R package applies the probabilistic model of species co-occurrence (Veech 2013) to a set of species distributed among a set of survey or sampling sites. The algorithm calculates the observed and expected frequencies of co-occurrence between each pair of species. The expected frequency is based on the distribution of each species being random and independent of the other species. The analysis returns the probabilities that a more extreme (either low or high) value of co-occurrence could have been obtained by chance. The package also includes functions for visualizing species co-occurrence results and preparing data for downstream analyses.

copied from cf-staging / r-cooccur

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Type Size Name Uploaded Downloads Labels
conda 101.5 kB | win-64/r-cooccur-1.3-r44h11b023d_1006.conda  8 months and 30 days ago 278 main
conda 100.4 kB | win-64/r-cooccur-1.3-r43h11b023d_1006.conda  8 months and 30 days ago 257 main
conda 100.2 kB | osx-64/r-cooccur-1.3-r43h6b9d099_1006.conda  8 months and 30 days ago 210 main
conda 101.3 kB | osx-64/r-cooccur-1.3-r44h6b9d099_1006.conda  8 months and 30 days ago 217 main
conda 99.6 kB | linux-64/r-cooccur-1.3-r43hdb488b9_1006.conda  8 months and 30 days ago 1000 main
conda 100.4 kB | linux-64/r-cooccur-1.3-r44hdb488b9_1006.conda  8 months and 30 days ago 966 main
conda 100.1 kB | win-64/r-cooccur-1.3-r41h6d2157b_1005.conda  1 year and 10 months ago 484 main
conda 99.7 kB | osx-64/r-cooccur-1.3-r42h6dc245f_1005.conda  1 year and 10 months ago 223 main
conda 99.8 kB | osx-64/r-cooccur-1.3-r43h6dc245f_1005.conda  1 year and 10 months ago 240 main
conda 99.0 kB | linux-64/r-cooccur-1.3-r42h57805ef_1005.conda  1 year and 10 months ago 1528 main
conda 99.3 kB | linux-64/r-cooccur-1.3-r43h57805ef_1005.conda  1 year and 10 months ago 1561 main
conda 101.3 kB | win-64/r-cooccur-1.3-r41h6d2157b_1004.tar.bz2  2 years and 6 months ago 535 main
conda 101.2 kB | osx-64/r-cooccur-1.3-r41h815d134_1004.tar.bz2  2 years and 6 months ago 73 main
conda 101.4 kB | osx-64/r-cooccur-1.3-r42h815d134_1004.tar.bz2  2 years and 6 months ago 74 main
conda 101.4 kB | linux-64/r-cooccur-1.3-r42h06615bd_1004.tar.bz2  2 years and 6 months ago 1865 main
conda 101.2 kB | linux-64/r-cooccur-1.3-r41h06615bd_1004.tar.bz2  2 years and 6 months ago 1935 main
conda 100.4 kB | win-64/r-cooccur-1.3-r41h6d2157b_1003.tar.bz2  3 years and 10 months ago 788 main
conda 106.5 kB | win-64/r-cooccur-1.3-r40h6d2157b_1003.tar.bz2  3 years and 10 months ago 795 main
conda 100.1 kB | osx-64/r-cooccur-1.3-r40h28b5c78_1003.tar.bz2  3 years and 10 months ago 132 main
conda 100.0 kB | osx-64/r-cooccur-1.3-r41h28b5c78_1003.tar.bz2  3 years and 10 months ago 129 main
conda 100.6 kB | linux-64/r-cooccur-1.3-r40hcfec24a_1003.tar.bz2  3 years and 10 months ago 2469 main
conda 100.6 kB | linux-64/r-cooccur-1.3-r41hcfec24a_1003.tar.bz2  3 years and 10 months ago 2510 main
conda 106.3 kB | win-64/r-cooccur-1.3-r36hda5aaf8_1003.tar.bz2  4 years and 11 months ago 1014 main
conda 105.7 kB | win-64/r-cooccur-1.3-r40hda5aaf8_1003.tar.bz2  4 years and 11 months ago 1027 main
conda 100.0 kB | osx-64/r-cooccur-1.3-r40h17f1fa6_1003.tar.bz2  4 years and 11 months ago 329 main
conda 100.3 kB | osx-64/r-cooccur-1.3-r36h17f1fa6_1003.tar.bz2  4 years and 11 months ago 312 main
conda 100.4 kB | linux-64/r-cooccur-1.3-r36hcdcec82_1003.tar.bz2  4 years and 11 months ago 3138 main
conda 99.8 kB | linux-64/r-cooccur-1.3-r40hcdcec82_1003.tar.bz2  4 years and 11 months ago 3140 main
conda 105.7 kB | win-64/r-cooccur-1.3-r36hda5aaf8_1002.tar.bz2  5 years and 8 months ago 1360 main cf202003
conda 104.5 kB | win-64/r-cooccur-1.3-r35hda5aaf8_1002.tar.bz2  5 years and 8 months ago 1383 main cf202003
conda 98.3 kB | osx-64/r-cooccur-1.3-r35h159158b_1002.tar.bz2  5 years and 8 months ago 356 main cf202003
conda 99.1 kB | osx-64/r-cooccur-1.3-r36h159158b_1002.tar.bz2  5 years and 8 months ago 352 main cf202003
conda 99.0 kB | linux-64/r-cooccur-1.3-r35hcdcec82_1002.tar.bz2  5 years and 8 months ago 3937 main cf202003
conda 100.0 kB | linux-64/r-cooccur-1.3-r36hcdcec82_1002.tar.bz2  5 years and 8 months ago 3965 main cf202003
conda 98.7 kB | linux-64/r-cooccur-1.3-r351h96ca727_1001.tar.bz2  6 years and 4 months ago 4776 main gcc7 cf202003
conda 98.3 kB | linux-64/r-cooccur-1.3-r351hc070d10_1.tar.bz2  6 years and 4 months ago 4677 main cf202003 cf201901
conda 98.4 kB | osx-64/r-cooccur-1.3-r351h46e59ec_1001.tar.bz2  6 years and 4 months ago 360 main gcc7 cf202003
conda 98.3 kB | osx-64/r-cooccur-1.3-r351hc070d10_1.tar.bz2  6 years and 4 months ago 352 main cf202003 cf201901
conda 104.1 kB | win-64/r-cooccur-1.3-r351h6115d3f_1001.tar.bz2  6 years and 4 months ago 1660 main cf202003 cf201901
conda 70.4 kB | osx-64/r-cooccur-1.3-r341h46e59ec_1.tar.bz2  6 years and 8 months ago 347 main cf202003 cf201901
conda 70.4 kB | linux-64/r-cooccur-1.3-r341h96ca727_1.tar.bz2  6 years and 8 months ago 4905 main cf202003 cf201901
conda 70.2 kB | osx-64/r-cooccur-1.3-r341h6115d3f_0.tar.bz2  6 years and 8 months ago 360 main cf202003 cf201901
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