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conda-forge / packages / r-cooccur

This R package applies the probabilistic model of species co-occurrence (Veech 2013) to a set of species distributed among a set of survey or sampling sites. The algorithm calculates the observed and expected frequencies of co-occurrence between each pair of species. The expected frequency is based on the distribution of each species being random and independent of the other species. The analysis returns the probabilities that a more extreme (either low or high) value of co-occurrence could have been obtained by chance. The package also includes functions for visualizing species co-occurrence results and preparing data for downstream analyses.

copied from cf-staging / r-cooccur

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Type Size Name Uploaded Downloads Labels
conda 101.5 kB | win-64/r-cooccur-1.3-r44h11b023d_1006.conda  8 months and 12 days ago 277 main
conda 100.4 kB | win-64/r-cooccur-1.3-r43h11b023d_1006.conda  8 months and 12 days ago 256 main
conda 100.2 kB | osx-64/r-cooccur-1.3-r43h6b9d099_1006.conda  8 months and 12 days ago 206 main
conda 101.3 kB | osx-64/r-cooccur-1.3-r44h6b9d099_1006.conda  8 months and 12 days ago 212 main
conda 99.6 kB | linux-64/r-cooccur-1.3-r43hdb488b9_1006.conda  8 months and 12 days ago 950 main
conda 100.4 kB | linux-64/r-cooccur-1.3-r44hdb488b9_1006.conda  8 months and 12 days ago 917 main
conda 100.1 kB | win-64/r-cooccur-1.3-r41h6d2157b_1005.conda  1 year and 9 months ago 483 main
conda 99.7 kB | osx-64/r-cooccur-1.3-r42h6dc245f_1005.conda  1 year and 9 months ago 222 main
conda 99.8 kB | osx-64/r-cooccur-1.3-r43h6dc245f_1005.conda  1 year and 9 months ago 239 main
conda 99.0 kB | linux-64/r-cooccur-1.3-r42h57805ef_1005.conda  1 year and 9 months ago 1492 main
conda 99.3 kB | linux-64/r-cooccur-1.3-r43h57805ef_1005.conda  1 year and 9 months ago 1517 main
conda 101.3 kB | win-64/r-cooccur-1.3-r41h6d2157b_1004.tar.bz2  2 years and 5 months ago 535 main
conda 101.2 kB | osx-64/r-cooccur-1.3-r41h815d134_1004.tar.bz2  2 years and 5 months ago 73 main
conda 101.4 kB | osx-64/r-cooccur-1.3-r42h815d134_1004.tar.bz2  2 years and 5 months ago 74 main
conda 101.4 kB | linux-64/r-cooccur-1.3-r42h06615bd_1004.tar.bz2  2 years and 5 months ago 1816 main
conda 101.2 kB | linux-64/r-cooccur-1.3-r41h06615bd_1004.tar.bz2  2 years and 5 months ago 1889 main
conda 100.4 kB | win-64/r-cooccur-1.3-r41h6d2157b_1003.tar.bz2  3 years and 10 months ago 788 main
conda 106.5 kB | win-64/r-cooccur-1.3-r40h6d2157b_1003.tar.bz2  3 years and 10 months ago 795 main
conda 100.1 kB | osx-64/r-cooccur-1.3-r40h28b5c78_1003.tar.bz2  3 years and 10 months ago 132 main
conda 100.0 kB | osx-64/r-cooccur-1.3-r41h28b5c78_1003.tar.bz2  3 years and 10 months ago 129 main
conda 100.6 kB | linux-64/r-cooccur-1.3-r40hcfec24a_1003.tar.bz2  3 years and 10 months ago 2426 main
conda 100.6 kB | linux-64/r-cooccur-1.3-r41hcfec24a_1003.tar.bz2  3 years and 10 months ago 2460 main
conda 106.3 kB | win-64/r-cooccur-1.3-r36hda5aaf8_1003.tar.bz2  4 years and 10 months ago 1014 main
conda 105.7 kB | win-64/r-cooccur-1.3-r40hda5aaf8_1003.tar.bz2  4 years and 10 months ago 1027 main
conda 100.0 kB | osx-64/r-cooccur-1.3-r40h17f1fa6_1003.tar.bz2  4 years and 10 months ago 329 main
conda 100.3 kB | osx-64/r-cooccur-1.3-r36h17f1fa6_1003.tar.bz2  4 years and 10 months ago 312 main
conda 100.4 kB | linux-64/r-cooccur-1.3-r36hcdcec82_1003.tar.bz2  4 years and 10 months ago 3094 main
conda 99.8 kB | linux-64/r-cooccur-1.3-r40hcdcec82_1003.tar.bz2  4 years and 10 months ago 3096 main
conda 105.7 kB | win-64/r-cooccur-1.3-r36hda5aaf8_1002.tar.bz2  5 years and 8 months ago 1360 main cf202003
conda 104.5 kB | win-64/r-cooccur-1.3-r35hda5aaf8_1002.tar.bz2  5 years and 8 months ago 1383 main cf202003
conda 98.3 kB | osx-64/r-cooccur-1.3-r35h159158b_1002.tar.bz2  5 years and 8 months ago 356 main cf202003
conda 99.1 kB | osx-64/r-cooccur-1.3-r36h159158b_1002.tar.bz2  5 years and 8 months ago 352 main cf202003
conda 99.0 kB | linux-64/r-cooccur-1.3-r35hcdcec82_1002.tar.bz2  5 years and 8 months ago 3887 main cf202003
conda 100.0 kB | linux-64/r-cooccur-1.3-r36hcdcec82_1002.tar.bz2  5 years and 8 months ago 3914 main cf202003
conda 98.7 kB | linux-64/r-cooccur-1.3-r351h96ca727_1001.tar.bz2  6 years and 4 months ago 4727 main gcc7 cf202003
conda 98.3 kB | linux-64/r-cooccur-1.3-r351hc070d10_1.tar.bz2  6 years and 4 months ago 4625 main cf202003 cf201901
conda 98.4 kB | osx-64/r-cooccur-1.3-r351h46e59ec_1001.tar.bz2  6 years and 4 months ago 360 main gcc7 cf202003
conda 98.3 kB | osx-64/r-cooccur-1.3-r351hc070d10_1.tar.bz2  6 years and 4 months ago 352 main cf202003 cf201901
conda 104.1 kB | win-64/r-cooccur-1.3-r351h6115d3f_1001.tar.bz2  6 years and 4 months ago 1660 main cf202003 cf201901
conda 70.4 kB | osx-64/r-cooccur-1.3-r341h46e59ec_1.tar.bz2  6 years and 7 months ago 347 main cf202003 cf201901
conda 70.4 kB | linux-64/r-cooccur-1.3-r341h96ca727_1.tar.bz2  6 years and 7 months ago 4855 main cf202003 cf201901
conda 70.2 kB | osx-64/r-cooccur-1.3-r341h6115d3f_0.tar.bz2  6 years and 8 months ago 360 main cf202003 cf201901
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