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A toolkit to predict antimicrobial peptides from protein sequences on a genome-wide scale. It incorporates two support vector machine models ("precursor" and "mature") trained on publicly available antimicrobial peptide data using calculated physico-chemical and compositional sequence properties described in Meher et al. (2017) <doi:10.1038/srep42362>. In order to support genome-wide analyses, these models are designed to accept any type of protein as input and calculation of compositional properties has been optimised for high-throughput use. For best results it is important to select the model that accurately represents your sequence type: for full length proteins, it is recommended to use the default "precursor" model. The alternative, "mature", model is best suited for mature peptide sequences that represent the final antimicrobial peptide sequence after post-translational processing. For details see Fingerhut et al. (2020) <doi:10.1093/bioinformatics/btaa653>. The 'ampir' package is also available via a Shiny based GUI at <https://ampir.marine-omics.net/>.

copied from cf-staging / r-ampir
Type Size Name Uploaded Downloads Labels
conda 1.7 MB | win-64/r-ampir-1.1.0-r44h8ae3a7c_4.conda  19 days and 16 hours ago 24 main
conda 1.7 MB | win-64/r-ampir-1.1.0-r43h8ae3a7c_4.conda  19 days and 17 hours ago 26 main
conda 1.7 MB | osx-arm64/r-ampir-1.1.0-r44h31118f2_4.conda  19 days and 17 hours ago 13 main
conda 1.7 MB | osx-64/r-ampir-1.1.0-r43h2711daa_4.conda  19 days and 17 hours ago 12 main
conda 1.7 MB | osx-arm64/r-ampir-1.1.0-r43h31118f2_4.conda  19 days and 17 hours ago 13 main
conda 1.7 MB | osx-64/r-ampir-1.1.0-r44h2711daa_4.conda  19 days and 17 hours ago 16 main
conda 1.7 MB | linux-ppc64le/r-ampir-1.1.0-r43h8455397_4.conda  19 days and 17 hours ago 6 main
conda 1.7 MB | linux-aarch64/r-ampir-1.1.0-r43h21d2c02_4.conda  19 days and 17 hours ago 16 main
conda 1.7 MB | linux-ppc64le/r-ampir-1.1.0-r44h8455397_4.conda  19 days and 17 hours ago 7 main
conda 1.7 MB | linux-64/r-ampir-1.1.0-r43h93ab643_4.conda  19 days and 17 hours ago 73 main
conda 1.7 MB | linux-aarch64/r-ampir-1.1.0-r44h21d2c02_4.conda  19 days and 17 hours ago 19 main
conda 1.7 MB | linux-64/r-ampir-1.1.0-r44h93ab643_4.conda  19 days and 17 hours ago 133 main
conda 1.7 MB | win-64/r-ampir-1.1.0-r44h8ae3a7c_3.conda  7 months and 18 days ago 449 main
conda 1.7 MB | win-64/r-ampir-1.1.0-r43h8ae3a7c_3.conda  7 months and 18 days ago 413 main
conda 1.7 MB | osx-64/r-ampir-1.1.0-r44h25d921d_3.conda  7 months and 18 days ago 290 main
conda 1.7 MB | osx-64/r-ampir-1.1.0-r43h25d921d_3.conda  7 months and 18 days ago 290 main
conda 1.7 MB | linux-64/r-ampir-1.1.0-r43h0d4f4ea_3.conda  7 months and 18 days ago 949 main
conda 1.7 MB | linux-64/r-ampir-1.1.0-r44h0d4f4ea_3.conda  7 months and 18 days ago 1013 main
conda 1.7 MB | win-64/r-ampir-1.1.0-r41ha856d6a_2.conda  1 year and 8 months ago 642 main
conda 1.7 MB | osx-64/r-ampir-1.1.0-r43hac7d2d5_2.conda  1 year and 8 months ago 313 main
conda 1.7 MB | osx-64/r-ampir-1.1.0-r42hac7d2d5_2.conda  1 year and 8 months ago 301 main
conda 1.7 MB | linux-64/r-ampir-1.1.0-r42ha503ecb_2.conda  1 year and 8 months ago 1532 main
conda 1.7 MB | linux-64/r-ampir-1.1.0-r43ha503ecb_2.conda  1 year and 8 months ago 1536 main
conda 1.7 MB | win-64/r-ampir-1.1.0-r41ha856d6a_1.tar.bz2  2 years and 5 months ago 532 main
conda 1.7 MB | osx-64/r-ampir-1.1.0-r41h49197e3_1.tar.bz2  2 years and 5 months ago 69 main
conda 1.7 MB | osx-64/r-ampir-1.1.0-r42h49197e3_1.tar.bz2  2 years and 5 months ago 71 main
conda 1.7 MB | linux-64/r-ampir-1.1.0-r41h7525677_1.tar.bz2  2 years and 5 months ago 1798 main
conda 1.7 MB | linux-64/r-ampir-1.1.0-r42h7525677_1.tar.bz2  2 years and 5 months ago 1796 main
conda 1.7 MB | win-64/r-ampir-1.1.0-r40ha856d6a_0.tar.bz2  3 years and 3 months ago 713 main
conda 1.7 MB | win-64/r-ampir-1.1.0-r41ha856d6a_0.tar.bz2  3 years and 3 months ago 725 main
conda 1.7 MB | osx-64/r-ampir-1.1.0-r41h9951f98_0.tar.bz2  3 years and 3 months ago 77 main
conda 1.7 MB | osx-64/r-ampir-1.1.0-r40h9951f98_0.tar.bz2  3 years and 3 months ago 80 main
conda 1.7 MB | linux-64/r-ampir-1.1.0-r40h03ef668_0.tar.bz2  3 years and 3 months ago 2126 main
conda 1.7 MB | linux-64/r-ampir-1.1.0-r41h03ef668_0.tar.bz2  3 years and 3 months ago 2193 main

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