Efficiently calculate RMSDs for large structure sets
copied from cf-staging / pyrmsdpyRMSD is a small Python package that aims to offer an integrative and efficient way of performing RMSD calculations of large sets of structures. It is specially tuned to do fast collective RMSD calculations, as pairwise RMSD matrices.
Note that this package does not currently include any CUDA calculators.
See the pyRMSD website and the publication for more details.