• License: MIT
• Home: https://kreshuklab.github.io/plant-seg/
• Development: https://github.com/kreshuklab/plant-seg
• Documentation: https://kreshuklab.github.io/plant-seg/
• 7056 total downloads
• Last upload: 8 days and 10 hours ago

Description

PlantSeg is a tool for cell instance aware segmentation in densely packed 3D volumetric images. The pipeline uses a two stage segmentation strategy (Neural Network + Graph Partitioning). The pipeline is tuned for plant cell tissue acquired with confocal and light sheet microscopy. Pre-trained models are provided.