Cell instance segmentation in densely packed 3D volumetric images
copied from cf-post-staging / pansegPanSeg is a tool for cell instance aware segmentation in densely packed 3D volumetric images. The pipeline uses a two stage segmentation strategy (Neural Network + Graph Partitioning). The pipeline is tuned for plant cell tissue acquired with confocal and light sheet microscopy. Pre-trained models are provided.
