• License: GPL-3.0-or-later
• Home: https://dynamic-fba.readthedocs.io
• Development: https://gitlab.com/davidtourigny/dynamic-fba
• Documentation: https://dynamic-fba.readthedocs.io
• 6171 total downloads
• Last upload: 3 years and 7 months ago

Description

This project provides an object-oriented software package for dynamic flux-balance analysis (DFBA) simulations using implementations of the direct method or Algorithm 1 described in the paper Harwood et al., 2016. The main algorithms for solving embedded LP problems are written in C++ and use the GNU Linear Programming Kit (GLPK) and the Suite of Nonlinear and Differential/Algebraic Equation Solvers (SUNDIALS) CVODE or IDA. Extension modules to cobrapy are provided for easy generation and simulation of DFBA models.