dfba
Object-oriented software for dynamic flux-balance analysis (DFBA) simulations.
Object-oriented software for dynamic flux-balance analysis (DFBA) simulations.
To install this package, run one of the following:
This project provides an object-oriented software package for dynamic flux-balance analysis (DFBA) simulations using implementations of the direct method or Algorithm 1 described in the paper Harwood et al., 2016. The main algorithms for solving embedded LP problems are written in C++ and use the GNU Linear Programming Kit (GLPK) and the Suite of Nonlinear and Differential/Algebraic Equation Solvers (SUNDIALS) CVODE or IDA. Extension modules to cobrapy are provided for easy generation and simulation of DFBA models.
Summary
Object-oriented software for dynamic flux-balance analysis (DFBA) simulations.
Last Updated
Apr 6, 2021 at 18:23
License
GPL-3.0-or-later
Total Downloads
9.4K
Supported Platforms
GitHub Repository
https://gitlab.com/davidtourigny/dynamic-fbaDocumentation
https://dynamic-fba.readthedocs.io