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dfba

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Object-oriented software for dynamic flux-balance analysis (DFBA) simulations.

Installation

To install this package, run one of the following:

Conda
$conda install conda-forge::dfba

Usage Tracking

0.1.8
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

This project provides an object-oriented software package for dynamic flux-balance analysis (DFBA) simulations using implementations of the direct method or Algorithm 1 described in the paper Harwood et al., 2016. The main algorithms for solving embedded LP problems are written in C++ and use the GNU Linear Programming Kit (GLPK) and the Suite of Nonlinear and Differential/Algebraic Equation Solvers (SUNDIALS) CVODE or IDA. Extension modules to cobrapy are provided for easy generation and simulation of DFBA models.

About

Summary

Object-oriented software for dynamic flux-balance analysis (DFBA) simulations.

Last Updated

Apr 6, 2021 at 18:23

License

GPL-3.0-or-later

Total Downloads

9.4K

Supported Platforms

linux-64
macOS-64