Calcium imaging analysis - 1p, 2p microscopy


conda install

  • linux-64  v1.6.2
  • win-64  v1.6.2
  • osx-64  v1.6.2
To install this package with conda run:
conda install -c conda-forge caiman


CaImAn implements a set of essential methods required in the analysis pipeline of large scale calcium imaging data. Fast and scalable algorithms are implemented for motion correction, source extraction, spike deconvolution, and component registration across multiple days. It is suitable for both two-photon and one-photon fluorescence microscopy data, and can be run in both batch and online mode.

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