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raxml-ng
|
public |
RAxML Next Generation: faster, easier-to-use and more flexible
|
2025-03-25 |
|
diamond
|
public |
Accelerated BLAST compatible local sequence aligner
|
2025-03-25 |
|
entrez-direct
|
public |
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.
|
2025-03-25 |
|
cget
|
public |
Cmake package retrieval
|
2025-03-25 |
|
pindel
|
public |
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data
|
2025-03-25 |
|
epic2
|
public |
Ultraperformant Chip-Seq broad domain finder based on SICER.
|
2025-03-25 |
|
muscle
|
public |
MUSCLE: multiple sequence alignment with high accuracy and high throughput
|
2025-03-25 |
|
macs2
|
public |
Model Based Analysis for ChIP-Seq data
|
2025-03-25 |
|
libdeflate
|
public |
libdeflate is a library for fast, whole-buffer DEFLATE-based compression and decompression.
|
2025-03-25 |
|
pilon
|
public |
Pilon is an automated genome assembly improvement and variant detection tool.
|
2025-03-25 |
|
phyldog
|
public |
PHYLDOG is a program allowing to simultaneously build gene and species trees when gene families have undergone duplications and losses. Trees and parameters are estimated in the maximum likelihood framework.
|
2025-03-25 |
|
perl-env
|
public |
perl module that imports environment variables as scalars or arrays
|
2025-03-25 |
|
qc3
|
public |
QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.
|
2025-03-25 |
|
perl-html-template
|
public |
Perl module to use HTML-like templating language
|
2025-03-25 |
|
travis_test
|
public |
This is a tester recipe that uses yaggo to test if our Travis-CI is working.
|
2025-03-25 |
|
refchef
|
public |
Genome reference manager.
|
2025-03-25 |
|
argparse
|
public |
No Summary
|
2025-03-25 |
|
bpp-phyl
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2025-03-25 |
|
bpp-seq
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2025-03-25 |
|
bpp-core
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2025-03-25 |
|
multiqc
|
public |
Create aggregate bioinformatics analysis reports across many samples and tools
|
2025-03-25 |
|
rsem-eval
|
public |
DETONATE (DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation) consists of two component packages, RSEM-EVAL and REF-EVAL.
|
2025-03-25 |
|
dendropy
|
public |
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
|
2025-03-25 |
|
subread
|
public |
High-performance read alignment, quantification, and mutation discovery
|
2025-03-25 |
|
perl-gdgraph
|
public |
Produces charts with GD
|
2025-03-25 |
|
perl-gdtextutil
|
public |
Text utilities for use with GD
|
2025-03-25 |
|
edge-pro
|
public |
EDGE-pro (Estimated Degree of Gene Expression in PROkaryotes) is an efficient software system to estimate gene expression levels in prokaryotic genomes from RNA-seq data. EDGE-pro uses Bowtie2 for alignment and then estimates expression directly from the alignment results. EDGE-pro includes routines to assign reads aligning to overlapping gene regions accurately. 15% or more of bacterial genes overlap other genes, making this a significant problem for bacterial RNA-seq, one that is generally ignored by programs designed for eukaryotic RNA-seq experiments.
|
2025-03-25 |
|
perl-switch
|
public |
A switch statement for Perl, do not use if you can use given/when
|
2025-03-25 |
|
perl-text-balanced
|
public |
Text::Balanced - Extract delimited text sequences from strings
|
2025-03-25 |
|
perl-if
|
public |
use a Perl module if a condition holds
|
2025-03-25 |
|
perl-vcftools-vcf
|
public |
cpanm ready distribution of VCFtools Perl libraries
|
2025-03-25 |
|
perl-time-hires
|
public |
High resolution alarm, sleep, gettimeofday, interval timers
|
2025-03-25 |
|
perl-pod-escapes
|
public |
for resolving Pod Elt...gt sequences
|
2025-03-25 |
|
perl-list-moreutils-xs
|
public |
Provide the stuff missing in List::Util in XS
|
2025-03-25 |
|
perl-array-utils
|
public |
small utils for array manipulation
|
2025-03-25 |
|
samtools
|
public |
Tools for dealing with SAM, BAM and CRAM files
|
2025-03-25 |
|
perl-yaml
|
public |
YAML Ain't Markup Language
|
2025-03-25 |
|
perl-xsloader
|
public |
Dynamically load C libraries into Perl code
|
2025-03-25 |
|
perl-xml-xpathengine
|
public |
a re-usable XPath engine for DOM-like trees
|
2025-03-25 |
|
perl-xml-xpath
|
public |
Parse and evaluate XPath statements.
|
2025-03-25 |
|
perl-xml-writer
|
public |
Easily generate well-formed, namespace-aware XML.
|
2025-03-25 |
|
perl-xml-twig
|
public |
XML, The Perl Way
|
2025-03-25 |
|
perl-xml-simple
|
public |
An API for simple XML files
|
2025-03-25 |
|
perl-xml-semanticdiff
|
public |
Perl extension for comparing XML documents.
|
2025-03-25 |
|
perl-xml-sax-writer
|
public |
SAX2 XML Writer
|
2025-03-25 |
|
perl-xml-sax-expat
|
public |
SAX Driver for Expat
|
2025-03-25 |
|
perl-xml-sax-base
|
public |
Base class for SAX Drivers and Filters
|
2025-03-25 |
|
perl-xml-sax
|
public |
Simple API for XML
|
2025-03-25 |
|
perl-xml-regexp
|
public |
Regular expressions for XML tokens
|
2025-03-25 |
|
perl-xml-parser-lite
|
public |
Lightweight pure-perl XML Parser (based on regexps)
|
2025-03-25 |
