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raxml-ng
|
public |
RAxML Next Generation: faster, easier-to-use and more flexible
|
2023-06-16 |
|
entrez-direct
|
public |
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.
|
2023-06-16 |
|
diamond
|
public |
Accelerated BLAST compatible local sequence aligner
|
2023-06-16 |
|
cget
|
public |
Cmake package retrieval
|
2023-06-16 |
|
epic2
|
public |
Ultraperformant Chip-Seq broad domain finder based on SICER.
|
2023-06-16 |
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pindel
|
public |
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data
|
2023-06-16 |
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libdeflate
|
public |
libdeflate is a library for fast, whole-buffer DEFLATE-based compression and decompression.
|
2023-06-16 |
|
muscle
|
public |
MUSCLE: multiple sequence alignment with high accuracy and high throughput
|
2023-06-16 |
|
macs2
|
public |
Model Based Analysis for ChIP-Seq data
|
2023-06-16 |
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pilon
|
public |
Pilon is an automated genome assembly improvement and variant detection tool.
|
2023-06-16 |
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phyldog
|
public |
PHYLDOG is a program allowing to simultaneously build gene and species trees when gene families have undergone duplications and losses. Trees and parameters are estimated in the maximum likelihood framework.
|
2023-06-16 |
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refchef
|
public |
Genome reference manager.
|
2023-06-16 |
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perl-html-template
|
public |
Perl module to use HTML-like templating language
|
2023-06-16 |
|
travis_test
|
public |
This is a tester recipe that uses yaggo to test if our Travis-CI is working.
|
2023-06-16 |
|
argparse
|
public |
No Summary
|
2023-06-16 |
|
perl-vcftools-vcf
|
public |
cpanm ready distribution of VCFtools Perl libraries
|
2023-06-16 |
|
bpp-seq
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2023-06-16 |
|
bpp-core
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2023-06-16 |
|
bpp-phyl
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2023-06-16 |
|
multiqc
|
public |
Create aggregate bioinformatics analysis reports across many samples and tools
|
2023-06-16 |
|
rsem-eval
|
public |
DETONATE (DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation) consists of two component packages, RSEM-EVAL and REF-EVAL.
|
2023-06-16 |
|
dendropy
|
public |
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
|
2023-06-16 |
|
perl-gdtextutil
|
public |
Text utilities for use with GD
|
2023-06-16 |
|
subread
|
public |
High-performance read alignment, quantification, and mutation discovery
|
2023-06-16 |
|
perl-gdgraph
|
public |
Produces charts with GD
|
2023-06-16 |
|
perl-if
|
public |
use a Perl module if a condition holds
|
2023-06-16 |
|
perl-text-balanced
|
public |
Text::Balanced - Extract delimited text sequences from strings
|
2023-06-16 |
|
perl-switch
|
public |
A switch statement for Perl, do not use if you can use given/when
|
2023-06-16 |
|
edge-pro
|
public |
EDGE-pro (Estimated Degree of Gene Expression in PROkaryotes) is an efficient software system to estimate gene expression levels in prokaryotic genomes from RNA-seq data. EDGE-pro uses Bowtie2 for alignment and then estimates expression directly from the alignment results. EDGE-pro includes routines to assign reads aligning to overlapping gene regions accurately. 15% or more of bacterial genes overlap other genes, making this a significant problem for bacterial RNA-seq, one that is generally ignored by programs designed for eukaryotic RNA-seq experiments.
|
2023-06-16 |
|
perl-xml-writer
|
public |
Easily generate well-formed, namespace-aware XML.
|
2023-06-16 |
|
perl-spiffy
|
public |
Spiffy Perl Interface Framework For You
|
2023-06-16 |
|
perl-set-scalar
|
public |
basic set operations
|
2023-06-16 |
|
perl-ole-storage_lite
|
public |
Read and write OLE storage files.
|
2023-06-16 |
|
perl-ntlm
|
public |
An NTLM authentication module
|
2023-06-16 |
|
perl-mozilla-ca
|
public |
Mozilla's CA cert bundle in PEM format
|
2023-06-16 |
|
perl-io-sessiondata
|
public |
supporting module for SOAP::Lite
|
2023-06-16 |
|
perl-extutils-cbuilder
|
public |
Compile and link C code for Perl modules
|
2023-06-16 |
|
perl-exporter
|
public |
Implements default import method for modules
|
2023-06-16 |
|
perl-digest-hmac
|
public |
Keyed-Hashing for Message Authentication
|
2023-06-16 |
|
perl-cpan-meta-check
|
public |
Verify requirements in a CPAN::Meta object
|
2023-06-16 |
|
perl-common-sense
|
public |
Sane defaults for Perl programs
|
2023-06-16 |
|
perl-cgi
|
public |
A generic file fetching mechanism
|
2023-06-16 |
|
perl-list-moreutils-xs
|
public |
Provide the stuff missing in List::Util in XS
|
2023-06-16 |
|
perl-xml-twig
|
public |
XML, The Perl Way
|
2023-06-16 |
|
perl-text-diff
|
public |
Perform diffs on files and record sets
|
2023-06-16 |
|
perl-test-fatal
|
public |
incredibly simple helpers for testing code with exceptions
|
2023-06-16 |
|
perl-task-weaken
|
public |
Ensure that a platform has weaken support
|
2023-06-16 |
|
perl-sub-exporter-progressive
|
public |
Only use Sub::Exporter if you need it
|
2023-06-16 |
|
perl-socket
|
public |
networking constants and support functions
|
2023-06-16 |
|
perl-postscript
|
public |
helper module for PostScript::TextBlock
|
2023-06-16 |
