|
raxml-ng
|
public |
RAxML Next Generation: faster, easier-to-use and more flexible
|
2025-03-25 |
|
diamond
|
public |
Accelerated BLAST compatible local sequence aligner
|
2025-03-25 |
|
entrez-direct
|
public |
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.
|
2025-03-25 |
|
cget
|
public |
Cmake package retrieval
|
2025-03-25 |
|
pindel
|
public |
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data
|
2025-03-25 |
|
epic2
|
public |
Ultraperformant Chip-Seq broad domain finder based on SICER.
|
2025-03-25 |
|
muscle
|
public |
MUSCLE: multiple sequence alignment with high accuracy and high throughput
|
2025-03-25 |
|
macs2
|
public |
Model Based Analysis for ChIP-Seq data
|
2025-03-25 |
|
libdeflate
|
public |
libdeflate is a library for fast, whole-buffer DEFLATE-based compression and decompression.
|
2025-03-25 |
|
pilon
|
public |
Pilon is an automated genome assembly improvement and variant detection tool.
|
2025-03-25 |
|
phyldog
|
public |
PHYLDOG is a program allowing to simultaneously build gene and species trees when gene families have undergone duplications and losses. Trees and parameters are estimated in the maximum likelihood framework.
|
2025-03-25 |
|
perl-env
|
public |
perl module that imports environment variables as scalars or arrays
|
2025-03-25 |
|
qc3
|
public |
QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.
|
2025-03-25 |
|
perl-html-template
|
public |
Perl module to use HTML-like templating language
|
2025-03-25 |
|
travis_test
|
public |
This is a tester recipe that uses yaggo to test if our Travis-CI is working.
|
2025-03-25 |
|
refchef
|
public |
Genome reference manager.
|
2025-03-25 |
|
argparse
|
public |
No Summary
|
2025-03-25 |
|
bpp-phyl
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2025-03-25 |
|
bpp-seq
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2025-03-25 |
|
bpp-core
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2025-03-25 |
|
multiqc
|
public |
Create aggregate bioinformatics analysis reports across many samples and tools
|
2025-03-25 |
|
rsem-eval
|
public |
DETONATE (DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation) consists of two component packages, RSEM-EVAL and REF-EVAL.
|
2025-03-25 |
|
dendropy
|
public |
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
|
2025-03-25 |
|
subread
|
public |
High-performance read alignment, quantification, and mutation discovery
|
2025-03-25 |
|
perl-gdgraph
|
public |
Produces charts with GD
|
2025-03-25 |
