Megadepth is an efficient tool for extracting coverage related information from RNA and DNA-seq BAM and BigWig files. It supports reading whole-genome coverage from BAM files and writing either indexed TSV or BigWig files, as well as efficient region coverage summary over intervals from both types of files.
| Name | Type | Version | Platform | Labels | Updated | Size | Downloads | Actions |
|---|
osx-64/megadepth-1.2.0-h1f6ca2e_7.tar.bz2 | conda | 1.2.0 | osx-64 | main | Dec 16, 2024, 07:15 AM | 105.61 KB | 65 | |
linux-64/megadepth-1.2.0-h5ca1c30_7.tar.bz2 | conda | 1.2.0 | linux-64 | main | Dec 15, 2024, 06:05 AM | 114.05 KB | 254 | |
linux-64/megadepth-1.2.0-h43eeafb_6.tar.bz2 | conda | 1.2.0 | linux-64 | main | Jun 8, 2024, 12:57 AM | 110.29 KB | 483 | |
osx-64/megadepth-1.2.0-hd576cc4_6.tar.bz2 | conda | 1.2.0 | osx-64 | main | Jun 6, 2024, 02:05 AM | 105.73 KB | 670 | |
osx-64/megadepth-1.2.0-h1bb6673_5.tar.bz2 | conda | 1.2.0 | osx-64 | main | May 27, 2023, 11:23 PM | 107.41 KB | 79 | |
linux-64/megadepth-1.2.0-h6ab5fc9_5.tar.bz2 | conda | 1.2.0 | linux-64 | main | May 18, 2023, 12:57 PM | 110.3 KB | 281 | |
linux-64/megadepth-1.2.0-hff880f7_4.tar.bz2 | conda | 1.2.0 | linux-64 | main | Mar 10, 2023, 07:17 AM | 110.9 KB | 191 | |
osx-64/megadepth-1.2.0-h5d6ff1e_4.tar.bz2 | conda | 1.2.0 | osx-64 | main | Mar 7, 2023, 03:08 PM | 105.56 KB | 65 | |
osx-64/megadepth-1.2.0-h06c6b18_3.tar.bz2 | conda | 1.2.0 | osx-64 | main | Sep 16, 2022, 07:58 AM | 110.4 KB | 80 | |
linux-64/megadepth-1.2.0-hea94271_3.tar.bz2 | conda | 1.2.0 | linux-64 | main | Sep 15, 2022, 03:40 PM | 110.59 KB | 299 | |
osx-64/megadepth-1.2.0-h8e4e0c9_2.tar.bz2 | conda | 1.2.0 | osx-64 | main | Aug 15, 2022, 03:03 AM | 114.29 KB | 1.3K | |
linux-64/megadepth-1.2.0-he1ff611_2.tar.bz2 | conda | 1.2.0 | linux-64 | main | Aug 15, 2022, 03:03 AM | 110.36 KB | 228 | |
linux-64/megadepth-1.2.0-h15cb65e_1.tar.bz2 | conda | 1.2.0 | linux-64 | main | Feb 23, 2022, 09:56 PM | 110.45 KB | 257 | |
osx-64/megadepth-1.2.0-h5f57fea_1.tar.bz2 | conda | 1.2.0 | osx-64 | main | Feb 23, 2022, 01:53 PM | 113.32 KB | 399 | |
linux-64/megadepth-1.2.0-h00214ad_0.tar.bz2 | conda | 1.2.0 | linux-64 | main | Feb 16, 2022, 01:47 AM | 109.16 KB | 237 | |
osx-64/megadepth-1.2.0-h5a58f0d_0.tar.bz2 | conda | 1.2.0 | osx-64 | main | Feb 16, 2022, 01:45 AM | 111.18 KB | 95 | |
linux-64/megadepth-1.1.3-h00214ad_1.tar.bz2 | conda | 1.1.3 | linux-64 | main | Jan 18, 2022, 11:10 PM | 103.97 KB | 251 | |
osx-64/megadepth-1.1.3-h5a58f0d_1.tar.bz2 | conda | 1.1.3 | osx-64 | main | Jan 16, 2022, 11:53 AM | 107.54 KB | 88 | |
linux-64/megadepth-1.1.3-ha140323_0.tar.bz2 | conda | 1.1.3 | linux-64 | main | Dec 30, 2021, 01:56 PM | 103.72 KB | 250 | |
osx-64/megadepth-1.1.3-hcdc8842_0.tar.bz2 | conda | 1.1.3 | osx-64 | main | Dec 30, 2021, 01:51 PM | 107.28 KB | 2.3K | |
linux-64/megadepth-1.1.2-ha140323_0.tar.bz2 | conda | 1.1.2 | linux-64 | main | Oct 13, 2021, 05:21 AM | 107.11 KB | 258 | |
osx-64/megadepth-1.1.2-hcdc8842_0.tar.bz2 | conda | 1.1.2 | osx-64 | main | Oct 13, 2021, 05:15 AM | 110.25 KB | 2.5K | |
osx-64/megadepth-1.1.1-hcdc8842_0.tar.bz2 | conda | 1.1.1 | osx-64 | main | Aug 26, 2021, 01:08 PM | 109.58 KB | 2.6K | |
linux-64/megadepth-1.1.1-ha140323_0.tar.bz2 | conda | 1.1.1 | linux-64 | main | Aug 26, 2021, 01:08 PM | 105.54 KB | 287 | |
linux-64/megadepth-1.1.0-ha140323_1.tar.bz2 | conda | 1.1.0 | linux-64 | main | Apr 6, 2021, 06:27 AM | 106.41 KB | 302 |