af_cluster
Predict multiple protein conformations via MSA sequence clustering (AF-Cluster).
Installation
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0.2025.10.07
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Description
Commands: ClusterMSA.py, CalculateModelFeatures.py, getPCAembedding.py, RunAF2.py, runESM.py
RunAF2.py needs AlphaFold2 parameters (not included). Pass --af2dir pointing at a directory where /data/params/paramsmodel1ptm.npz exists.
About
Summary
Predict multiple protein conformations via MSA sequence clustering (AF-Cluster).
Last Updated
Aug 5, 2026 at 17:22
License
MIT
Supported Platforms
noarch