HCC
by Holland Computing Center (Organization)
hcc.unl.edu | [email protected] Depends on: conda-forge, bioconda Source: github_dot_com/unlhcc/hcc-conda-recipes
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| Ranking | Name | Version |
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Usage Instructions
To install packages from this channel, use the channel temporarily with conda or add it to your .condarc file for configured ongoing access. Learn more
- Temporary
- Configured
Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| 3dslicer | 5.0.3 | Multi-platform, free open source software for visualization and image computing. | Mar 25, 2025 | Custom OSS |
| abacas | 1.3.1 | ABACAS is intended to rapidly contiguate (align, order, orientate), visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence. | Feb 6, 2026 | GPL-2 |
| abayesqr | 1.0 | aBayesQR is a viral quasispecies reconstruction algorithm that employs a maximum-likelihood framework to infer individual sequences in a mixture from high-throughput sequencing data. | Mar 25, 2025 | Custom OSS |
| abinit | 10.4.5 | ABINIT is an atomic-scale simulation software suite. | Feb 6, 2026 | GPL-3.0-only |
| adfr-suite | 1.0 | AutoDockFR (or ADFR in short) is a protein-ligand docking program developed in the Sanner laboratory at Scripps Research under the AutoDock umbrella | Mar 25, 2025 | OTHER |
| afni | 23.1.10 | AFNI is a suite of programs for looking at and analyzing 3D brain images. | Mar 25, 2025 | GPL-2.0 |
| age | 2016.01.18.1 | a tools that implements an algorithm for optimal alignment of sequences with structural variants (SVs) | Mar 25, 2025 | CCPL (Creative Commons Public License) |
| aiozmq | 0.7.1 | ZeroMQ integration with asyncio. | Mar 25, 2025 | BSD License |
| allennlp | 1.2.2 | An open-source NLP research library, built on PyTorch. | Mar 25, 2025 | Apache-2.0 |
| allennlp-models | 1.2.2 | Officially supported models for the AllenNLP framework. | Mar 25, 2025 | Apache-2.0 |
| amorph | 0.0.2021.05.10 | AMORPH utilizes a new Bayesian statistical approach to interpreting X-ray diffraction results of samples with both crystalline and amorphous components. | Feb 6, 2026 | GPL-3.0 |
| ankh | 1.10.0 | Optimized Protein Language Model | Jan 7, 2026 | MPL-2.0 |
| anvio | 7.1 | A platform for integrated multi-omics | Mar 25, 2025 | GPL-3.0-or-later |
| anvio-minimal | 7.1 | An interactive analysis and visualization platform for omics data | Mar 25, 2025 | GPL-3.0-or-later |
| apache-batik | 1.11 | Batik is a Java-based toolkit for applications or applets that want to use images in the Scalable Vector Graphics (SVG) format for various purposes, such as display, generation or manipulation. | Mar 25, 2025 | Apache |
| apkid | 1.0.0 | Android Application Identifier for Packers, Protectors, Obfuscators and Oddities - PEiD for Android. | Mar 25, 2025 | GNU GPL |
| argp-standalone | 1.3 | Standalone version of arguments parsing functions from GLIBC. | Mar 25, 2025 | GPLv2 |
| argx | 0.2.11 | Super-charged argparse for python | Mar 25, 2025 | MIT |
| armadillo | 9.100.5 | Armadillo C++ linear algebra library | Mar 25, 2025 | Apache 2.0 |
| ase | 3.10.0 | Atomic Simulation Environment | Mar 25, 2025 | GNU Lesser General Public License v2 or later (LGPLv2+) |
| ashs | 2.0.0 | ASHS is software for automatic segmentation of the medial temporal lobe (MTL) substructures from brain MRI scans. | Feb 6, 2026 | GPL-3.0 |
| aspera-cli | 3.9.6 | IBM Aspera Command-Line Interface (the Aspera CLI) is a collection of Aspera tools for performing high-speed, secure data transfers from the command line. | Mar 25, 2025 | Proprietary |
| atactk-cutruntools | 0.1.6 | A patched version of the atactk package for use with cutruntools. | Mar 25, 2025 | GPLv3 |
| audioread | 2.1.1 | cross-library (GStreamer + Core Audio + MAD + FFmpeg) audio decoding for Python | Mar 25, 2025 | MIT |
| autodock | 4.2.6 | AutoDock is a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure. | Mar 25, 2025 | GPLv2 |