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bioconda / packages / vcf-pg-loader 0.5.4

High-performance VCF to PostgreSQL loader with clinical-grade compliance

Installers

  • noarch v0.5.4

conda install

To install this package run one of the following:
conda install bioconda::vcf-pg-loader

Description

vcf-pg-loader is a command-line tool for efficiently loading VCF variant data into PostgreSQL databases. It features streaming VCF parsing with cyvcf2, variant normalization using the vt algorithm, proper Number=A/R/G field handling during multi-allelic decomposition, and binary COPY protocol via asyncpg for maximum insert performance.


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