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Rust implementation of the stopFree coding potential tool

Installers

  • linux-aarch64 v0.2.4
  • linux-64 v0.2.4
  • osx-arm64 v0.2.4
  • osx-64 v0.2.4

conda install

To install this package run one of the following:
conda install bioconda::stopfree

Description

A fast Rust implementation (with Python bindings via PyO3) of the stopFree coding potential tool. It measures the longest stop codon free length of sequence in each of the 6 possible reading frames, calculates per-sequence GC content, and computes the probability of observing a stop-free run of the given length under an iid model corrected for GC content.


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