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a command-line tool for extracting unordered read data from SRA files

Installers

  • osx-64 v0.2
  • linux-64 v0.2

conda install

To install this package run one of the following:
conda install bioconda::sracat

Description

sracat is small C++ program that uses the NCBI sra-toolkit C++ API to extract sequence (and optionally quailty scores) from SRA records. Unlike the fasterq-dump program included with the sra-toolkit, sracat does not output the reads in their origianlly submitted order, but rather outputs reads in the order in which they are stored in the SRA file.


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