sracat
a command-line tool for extracting unordered read data from SRA files
a command-line tool for extracting unordered read data from SRA files
To install this package, run one of the following:
sracat is small C++ program that uses the NCBI sra-toolkit C++ API to extract sequence (and optionally quailty scores) from SRA records. Unlike the fasterq-dump program included with the sra-toolkit, sracat does not output the reads in their origianlly submitted order, but rather outputs reads in the order in which they are stored in the SRA file.
Summary
a command-line tool for extracting unordered read data from SRA files
Last Updated
Sep 20, 2021 at 16:33
License
BSD-3-Clause
Total Downloads
8.3K
Supported Platforms
GitHub Repository
https://github.com/lanl/sracat