About Anaconda Help Download Anaconda

At heart, SingleM is a tool for profiling shotgun metagenomes. It was originally designed to determine the relative abundance of bacterial and archaeal taxa in a sample. As of version 0.19.0, it can also be used to profile dsDNA phages (see Lyrebird). It shows good accuracy in estimating the relative abundances of community members, and has a particular strength in dealing with novel lineages. The method it uses also makes it suitable for some related tasks, such as assessing eukaryotic contamination, finding bias in genome recovery, and lineage-targeted MAG recovery. It can also be used as the basis for choosing metagenomes which, when coassembled, maximise the recovery of novel MAGs (see Bin Chicken).

Type Size Name Uploaded Downloads Labels
conda 161.0 kB | noarch/singlem-0.19.0-pyhdfd78af_0.tar.bz2  3 months and 21 days ago 264 main
conda 158.5 kB | noarch/singlem-0.18.3-pyhdfd78af_0.tar.bz2  1 year and 20 days ago 1131 main
conda 158.5 kB | noarch/singlem-0.18.2-pyhdfd78af_0.tar.bz2  1 year and 1 month ago 648 main
conda 157.9 kB | noarch/singlem-0.18.1-pyhdfd78af_1.tar.bz2  1 year and 1 month ago 592 main
conda 157.8 kB | noarch/singlem-0.18.1-pyhdfd78af_0.tar.bz2  1 year and 1 month ago 491 main
conda 157.1 kB | noarch/singlem-0.18.0-pyhdfd78af_0.tar.bz2  1 year and 2 months ago 815 main
conda 156.9 kB | noarch/singlem-0.17.0-pyhdfd78af_0.tar.bz2  1 year and 2 months ago 668 main
conda 151.0 kB | noarch/singlem-0.16.0-pyhdfd78af_0.tar.bz2  1 year and 9 months ago 1519 main
conda 149.8 kB | noarch/singlem-0.15.1-pyhdfd78af_0.tar.bz2  1 year and 9 months ago 1096 main
conda 149.5 kB | noarch/singlem-0.15.0-pyhdfd78af_0.tar.bz2  1 year and 10 months ago 1256 main
conda 149.2 kB | noarch/singlem-0.14.0-pyhdfd78af_0.tar.bz2  1 year and 11 months ago 1183 main
conda 42.2 MB | noarch/singlem-0.13.2-pyhdfd78af_2.tar.bz2  3 years and 26 days ago 2193 main
conda 42.3 MB | noarch/singlem-0.13.2-pyhdfd78af_1.tar.bz2  3 years and 27 days ago 187 main
conda 42.2 MB | noarch/singlem-0.13.2-py_0.tar.bz2  5 years and 4 months ago 1131 main

© 2025 Anaconda, Inc. All Rights Reserved. (v4.2.1) Legal | Privacy Policy