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At heart, SingleM is a tool for profiling shotgun metagenomes. It was originally designed to determine the relative abundance of bacterial and archaeal taxa in a sample. As of version 0.19.0, it can also be used to profile dsDNA phages (see Lyrebird). It shows good accuracy in estimating the relative abundances of community members, and has a particular strength in dealing with novel lineages. The method it uses also makes it suitable for some related tasks, such as assessing eukaryotic contamination, finding bias in genome recovery, and lineage-targeted MAG recovery. It can also be used as the basis for choosing metagenomes which, when coassembled, maximise the recovery of novel MAGs (see Bin Chicken).

Type Size Name Uploaded Downloads Labels
conda 161.0 kB | noarch/singlem-0.19.0-pyhdfd78af_0.tar.bz2  4 months and 11 days ago 328 main
conda 158.5 kB | noarch/singlem-0.18.3-pyhdfd78af_0.tar.bz2  1 year and 1 month ago 1165 main
conda 158.5 kB | noarch/singlem-0.18.2-pyhdfd78af_0.tar.bz2  1 year and 2 months ago 673 main
conda 157.9 kB | noarch/singlem-0.18.1-pyhdfd78af_1.tar.bz2  1 year and 2 months ago 617 main
conda 157.8 kB | noarch/singlem-0.18.1-pyhdfd78af_0.tar.bz2  1 year and 2 months ago 521 main
conda 157.1 kB | noarch/singlem-0.18.0-pyhdfd78af_0.tar.bz2  1 year and 3 months ago 845 main
conda 156.9 kB | noarch/singlem-0.17.0-pyhdfd78af_0.tar.bz2  1 year and 3 months ago 694 main
conda 151.0 kB | noarch/singlem-0.16.0-pyhdfd78af_0.tar.bz2  1 year and 9 months ago 1544 main
conda 149.8 kB | noarch/singlem-0.15.1-pyhdfd78af_0.tar.bz2  1 year and 10 months ago 1121 main
conda 149.5 kB | noarch/singlem-0.15.0-pyhdfd78af_0.tar.bz2  1 year and 11 months ago 1283 main
conda 149.2 kB | noarch/singlem-0.14.0-pyhdfd78af_0.tar.bz2  1 year and 11 months ago 1210 main
conda 42.2 MB | noarch/singlem-0.13.2-pyhdfd78af_2.tar.bz2  3 years and 1 month ago 2222 main
conda 42.3 MB | noarch/singlem-0.13.2-pyhdfd78af_1.tar.bz2  3 years and 1 month ago 192 main
conda 42.2 MB | noarch/singlem-0.13.2-py_0.tar.bz2  5 years and 5 months ago 1135 main

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