Single-cell copy number calling and event history reconstruction
SCICoNE is a statistical model and MCMC algorithm tailored to single-cell
copy number profiling from shallow whole-genome DNA sequencing data. It
reconstructs the history of copy number events in the tumour and uses these
evolutionary relationships to identify the copy number profiles of the
individual cells. This package provides the command line executables
(prefixed with scicone-) and the scicone Python interface to them.
