Evaluation of thermodynamic and kinetic features of RNA-RNA interactions.
RRIkinDP evaluated thermodynamic and kinetic features of RNA-RNA interactions. As input, two RNA sequences as well as their interaction structure is provided. The tool generates the state space of all intermediate interactions from single base pair interactions to the full input interaction. On top of this state space it computes the barrier energy for the best direct path from a given start interaction to the full input interaction.
