| Package Name | Access | Summary | Updated |
|---|---|---|---|
| ezaai | public | EzAAI is a suite of workflows for improved AAI calculation performance along with the novel module that provides hierarchical clustering analysis and dendrogram representation. | 2025-07-31 |
| cyvcf2 | public | A cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files | 2025-07-31 |
| genome-uploader | public | Python script to upload bins and MAGs in fasta format to ENA (European Nucleotide Archive). | 2025-07-31 |
| bifrost-httr | public | Pre-release version for testing purposes only | 2025-07-31 |
| nomadic | public | Mobile sequencing and analysis in real-time | 2025-07-31 |
| changeo | public | A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data. | 2025-07-31 |
| ntcard | public | Estimating k-mer coverage histogram of genomics data | 2025-07-31 |
| cuttlefish | public | Construction of the compacted de Bruijn graph efficiently | 2025-07-31 |
| ghostz | public | GHOSTZ is a highly efficient remote homologue detection tool | 2025-07-31 |
| soapdenovo-trans | public | No Summary | 2025-07-31 |
| blue-crab | public | lossless nanopore pod5 <=> s/blow5 file conversion | 2025-07-31 |
| jccirc | public | circRNA assembler through integrated junction contigs | 2025-07-31 |
| r-pathosurveilr | public | Utilities for interacting with the pathogensurveillance pipeline. | 2025-07-31 |
| trtools | public | Toolkit for genome-wide analysis of tandem repeats | 2025-07-31 |
| ciri-full | public | Full length circRNA reconstruction and quantification using BSJ and reverse overlap (RO) features. | 2025-07-31 |
| sspace_basic | public | Scaffolding Pre-Assemblies After Contig Extension (SSPACE) | 2025-07-31 |
| ms2rescore | public | Modular and user-friendly platform for AI-assisted rescoring of peptide identifications | 2025-07-31 |
| haplogrep3 | public | A tool for mtDNA haplogroup classification. | 2025-07-31 |
| phables | public | Phables: from fragmented assemblies to high-quality bacteriophage genomes | 2025-07-31 |
| liana | public | LIANA+: a one-stop-shop framework for cell-cell communication | 2025-07-31 |
| r-circrnafull | public | An R package for reconstruction of full length circRNA sequence using chimeric alignment information | 2025-07-31 |
| muscle | public | Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences | 2025-07-31 |
| bx-python | public | Tools for manipulating biological data, particularly multiple sequence alignments. | 2025-07-31 |
| kmer-db | public | Kmer-db is a fast and memory-efficient tool for estimating evolutionary distances. | 2025-07-30 |
| agc | public | Assembled Genomes Compressor (AGC) is a tool designed to compress collections of de-novo assembled genomes. It can be used for various types of datasets: short genomes (viruses) as well as long (humans). | 2025-07-30 |
