bioconductor-spatialdecon
Deconvolution of mixed cells from spatial and/or bulk gene expression data
Deconvolution of mixed cells from spatial and/or bulk gene expression data
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Using spatial or bulk gene expression data, estimates abundance of mixed cell types within each observation. Based on "Advances in mixed cell deconvolution enable quantification of cell types in spatial transcriptomic data", Danaher (2022). Designed for use with the NanoString GeoMx platform, but applicable to any gene expression data.
Summary
Deconvolution of mixed cells from spatial and/or bulk gene expression data
Information Last Updated
Apr 22, 2025 at 15:29
License
MIT + file LICENSE
Total Downloads
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