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bioconductor-spatialdecon

Community

Deconvolution of mixed cells from spatial and/or bulk gene expression data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-spatialdecon

Usage Tracking

1.16.0
1.12.0
1.10.0
1.8.0
1.3.0
5 / 8 versions selected
Total downloads: 0

Description

Using spatial or bulk gene expression data, estimates abundance of mixed cell types within each observation. Based on "Advances in mixed cell deconvolution enable quantification of cell types in spatial transcriptomic data", Danaher (2022). Designed for use with the NanoString GeoMx platform, but applicable to any gene expression data.

About

Summary

Deconvolution of mixed cells from spatial and/or bulk gene expression data

Information Last Updated

Apr 22, 2025 at 15:29

License

MIT + file LICENSE

Total Downloads

12.8K

Platforms

noarch Version: 1.16.0