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bioconda / packages / bioconductor-spatialdecon 1.12.0

Deconvolution of mixed cells from spatial and/or bulk gene expression data

Installers

  • noarch v1.12.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-spatialdecon

Description

Using spatial or bulk gene expression data, estimates abundance of mixed cell types within each observation. Based on "Advances in mixed cell deconvolution enable quantification of cell types in spatial transcriptomic data", Danaher (2022). Designed for use with the NanoString GeoMx platform, but applicable to any gene expression data.


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