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jalview
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public |
Jalview is a free program for multiple sequence alignment editing, visualisation, analysis and figure generation.
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2025-09-04 |
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genome2tree
|
public |
A pipeline to build phylogenetic trees from genome comparisons
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2025-09-04 |
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rseqc
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public |
QC package for RNA-seq data.
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2025-09-04 |
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biobb_io
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public |
Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.
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2025-09-04 |
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biobb_pdb_tools
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public |
Biobb_pdb_tools is a swiss army knife for manipulating and editing PDB files.
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2025-09-04 |
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dms
|
public |
Comprehensive taxonomic and phylogenetic comparison of shotgun metagenomes at the species level
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2025-09-04 |
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fairease-source
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public |
SOURCE: Sea Observations Utility for Reprocessing, Calibration and Evaluation.
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2025-09-04 |
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pyrle
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public |
Genomic Rle-objects for Python
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2025-09-04 |
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kraken2
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public |
Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
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2025-09-04 |
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goleft
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public |
goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
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2025-09-04 |
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gridss
|
public |
GRIDSS: the Genomic Rearrangement IDentification Software Suite
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2025-09-04 |
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grabix
|
public |
a wee tool for random access into BGZF files.
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2025-09-04 |
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umis
|
public |
Tools for processing UMI RNA-tag data
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2025-09-04 |
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atropos
|
public |
trim adapters from high-throughput sequencing reads
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2025-09-04 |
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hmmcopy
|
public |
C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
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2025-09-04 |
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mawk
|
public |
mawk is an interpreter for the AWK Programming Language.
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2025-09-04 |
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pod5
|
public |
Oxford Nanopore Technologies Pod5 File Format Python API and Tools.
|
2025-09-04 |
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decenttree
|
public |
Scalable Neighbour-Joining and related algorithms for phylogenetic inference
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2025-09-04 |
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svision-pro
|
public |
Neural-network-based long-read SV caller.
|
2025-09-04 |
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haploclique
|
public |
Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
|
2025-09-04 |
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craq
|
public |
Pinpoint assembly errors for genomic assessing and correcting.
|
2025-09-04 |
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zdb
|
public |
zDB is both a bacterial comparative genomics pipeline and a tool to visualize the results
|
2025-09-04 |
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padloc
|
public |
Locate antiviral defence systems in prokaryotic genomes
|
2025-09-04 |
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mitosalt
|
public |
MitoSAlt is a pipeline to identify large deletions and duplications in human and mouse mitochondrial genomes from next generation whole genome/exome sequencing data. The pipeline is capable of analyzing any circular genome in principle, as long as a proper configuration file is provided.
|
2025-09-04 |
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plmc
|
public |
Inference of couplings in proteins and RNAs from sequence variation.
|
2025-09-04 |
