| Package Name | Access | Summary | Updated |
|---|---|---|---|
| eggnog-mapper | public | Fast genome-wide functional annotation through orthology assignment. | 2025-09-13 |
| captus | public | Captus: Assembly of Phylogenomic Datasets from High-Throughput Sequencing data. | 2025-09-13 |
| quaqc | public | Quick ATAC-seq Quality Control. | 2025-09-13 |
| meteor | public | Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. | 2025-09-13 |
| gseapy | public | Gene Set Enrichment Analysis in Python. | 2025-09-13 |
| pyjess | public | Cython bindings and Python interface to JESS, a 3D template matching software. | 2025-09-13 |
| perl-excel-writer-xlsx | public | Create a new file in the Excel 2007+ XLSX format. | 2025-09-13 |
| suvtk | public | Tool to submit viral sequences to Genbank. | 2025-09-13 |
| snakemake-interface-storage-plugins | public | This package provides a stable interface for interactions between Snakemake and its storage plugins. | 2025-09-13 |
| fufihla | public | HLA typing pipeline for long reads (FuFiHLA) with a location-aware CLI. | 2025-09-13 |
| snakemake-executor-plugin-kubernetes | public | A snakemake executor plugin for submission of jobs to Kubernetes. | 2025-09-13 |
| pmultiqc | public | Python package for quality control of proteomics datasets, based on multiqc package | 2025-09-13 |
| cryptogenotyper | public | This package crypto_typer: tool to subtype the parasite, Cryptosporidium, based on the 18S and gp60 markers. | 2025-09-12 |
| annotsv | public | Annotation and Ranking of Structural Variation. | 2025-09-12 |
| gtdbtk | public | A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. | 2025-09-12 |
| isodesign | public | Facilitates the choice of the optimal isotopic composition of labeled substrates in 13C-fluxomics experiments. | 2025-09-12 |
| treesimulator | public | Simulation of rooted phylogenetic trees under a given Multitype Birth–Death (MTBD) model. | 2025-09-12 |
| easypqp | public | EasyPQP: Simple library generation for OpenSWATH | 2025-09-11 |
| artic | public | ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore. | 2025-09-11 |
| jbrowse2 | public | The JBrowse 2 Genome Browser | 2025-09-11 |
| pango-designation | public | Repository for suggesting new lineages that should be added to the current scheme. | 2025-09-11 |
| straglr | public | Short-tandem repeat genotyping using long reads | 2025-09-10 |
| tobias | public | Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal. | 2025-09-10 |
| sequali | public | Fast sequencing quality metrics | 2025-09-10 |
| dfast | public | DDBJ Fast Annotation and Submission Tool - Prokaryotic genome annotation pipeline | 2025-09-10 |
