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esme_netcdf-c_mpich_4_2_3
|
public |
NetCDF-C - netCDF interface for C
|
2025-02-11 |
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lollipop
|
public |
A tool for Deconvolution for Wastewater Genomics
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2025-02-11 |
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tbl2asn-forever
|
public |
tbl2asn is a program that automates the creation of sequence records for submission to GenBank
|
2025-02-11 |
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fiji
|
public |
Fiji is an image processing package—a "batteries-included" distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis.
|
2025-02-11 |
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piler-cr
|
public |
Identification and analysis of CRISPR repeats.
|
2025-02-11 |
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pycomo
|
public |
PyCoMo is a software package for generating and analysing compartmentalized community metabolic models.
|
2025-02-11 |
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ena-upload-cli
|
public |
Command Line Interface to upload data to the European Nucleotide Archive
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2025-02-11 |
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biobb_mem
|
public |
Biobb_mem is the Biobb module for membrane structure analysis.
|
2025-02-11 |
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pybigtools
|
public |
pybigtools: Python bindings to the Bigtools Rust library for high-performance BigWig and BigBed I/O
|
2025-02-11 |
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unicore
|
public |
Universal and efficient core gene phylogeny with Foldseek and ProstT5
|
2025-02-11 |
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paraphase
|
public |
HiFi-based caller for highly homologous genes
|
2025-02-11 |
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nanosim
|
public |
NanoSim is a fast and scalable read simulator for Nanopore sequencing data.
|
2025-02-11 |
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metabuli
|
public |
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid
|
2025-02-11 |
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bigtools
|
public |
Bigtools provides a high-level, performant API for reading and writing bigWig and bigBed files.
|
2025-02-10 |
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raven-assembler
|
public |
Raven is an assembler for raw reads generated by the third generation sequencing.
|
2025-02-10 |
|
peaks2utr
|
public |
A robust, parallelized Python CLI for annotating three_prime_UTR
|
2025-02-10 |
|
sibeliaz
|
public |
A fast whole-genome aligner based on de Bruijn graphs.
|
2025-02-10 |
|
libidn
|
public |
No Summary
|
2025-02-10 |
|
maf2synteny
|
public |
A tool that postprocesses whole genome alignment (for two or more genomes) and produces coarse-grained synteny blocks.
|
2025-02-10 |
|
ska2
|
public |
SKA (Split Kmer Analysis) version 2
|
2025-02-10 |
|
pydamage
|
public |
Damage parameter estimation for ancient DNA.
|
2025-02-10 |
|
artic-porechop
|
public |
Adapter removal and demultiplexing of Oxford Nanopore reads (fork of rrwick/Porechop)
|
2025-02-10 |
|
ctyper
|
public |
Genotyping sequence-resolved copy-number variation using pangenomes.
|
2025-02-10 |
|
tmalign
|
public |
TM-align sequence-order independent protein structure alignment.
|
2025-02-10 |
|
r-tidyheatmap
|
public |
This is a tidy implementation for heatmap. At the moment it is based on the (great) package 'ComplexHeatmap'. The goal of this package is to interface a tidy data frame with this powerful tool. Some of the advantages are: Row and/or columns colour annotations are easy to integrate just specifying one parameter (column names). Custom grouping of rows is easy to specify providing a grouped tbl. For example: df %>% group_by(...). Labels size adjusted by row and column total number. Default use of Brewer and Viridis palettes.
|
2025-02-09 |
|
n50
|
public |
calculate N50 from FASTA/FASTQ files, producing both machine and human friendly outputs
|
2025-02-09 |
|
multiqc
|
public |
Create aggregate bioinformatics analysis reports across many samples and tools.
|
2025-02-09 |
|
confindr
|
public |
Detect intra- and inter-species bacterial contamination in NGS reads.
|
2025-02-07 |
|
trgt
|
public |
Tandem repeat genotyping and visualization from PacBio HiFi data
|
2025-02-07 |
|
teloscope
|
public |
A telomere annotation tools for genome assemblies
|
2025-02-07 |
|
varvamp
|
public |
Variable VirusAMPlicons (varVAMP) is a tool to design primers for highly diverse viruses.
|
2025-02-07 |
|
defense-finder
|
public |
Defense Finder: allow for a systematic search of all known anti-phage systems.
|
2025-02-07 |
|
genoflu
|
public |
Influenza data pipeline to automate genotyping assignment.
|
2025-02-07 |
|
nbitk
|
public |
nbitk: Naturalis BioInformatics ToolKit
|
2025-02-07 |
|
perl-mime-types
|
public |
Definition of MIME types
|
2025-02-07 |
|
bioconductor-fgsea
|
public |
Fast Gene Set Enrichment Analysis
|
2025-02-07 |
|
bioconductor-xcms
|
public |
LC-MS and GC-MS Data Analysis
|
2025-02-07 |
|
bioconductor-camera
|
public |
Collection of annotation related methods for mass spectrometry data
|
2025-02-07 |
|
bioconductor-massspecwavelet
|
public |
Peak Detection for Mass Spectrometry data using wavelet-based algorithms
|
2025-02-07 |
|
ncbi-amrfinderplus
|
public |
AMRFinderPlus finds antimicrobial resistance and other genes in protein or nucleotide sequences.
|
2025-02-07 |
|
freyja
|
public |
Freyja recovers relative lineage abundances from mixed SARS-CoV-2 samples and provides functionality to analyze lineage dynamics.
|
2025-02-07 |
|
biobox_add_taxid
|
public |
CAMI amber utility script for adding the taxid output from GTDB and BAT
|
2025-02-07 |
|
bioconductor-globalancova
|
public |
Global test for groups of variables via model comparisons
|
2025-02-06 |
|
bioconductor-msnbase
|
public |
Base Functions and Classes for Mass Spectrometry and Proteomics
|
2025-02-06 |
|
bioconductor-multtest
|
public |
Resampling-based multiple hypothesis testing
|
2025-02-06 |
|
bioconductor-rbgl
|
public |
An interface to the BOOST graph library
|
2025-02-06 |
|
ncbi-stxtyper
|
public |
StxTyper identifies and types Stx operons from assembled genomic sequence.
|
2025-02-06 |
|
bioconductor-sparsearray
|
public |
High-performance sparse data representation and manipulation in R
|
2025-02-06 |
|
bioconductor-delayedarray
|
public |
A unified framework for working transparently with on-disk and in-memory array-like datasets
|
2025-02-06 |
|
bioconductor-mscoreutils
|
public |
Core Utils for Mass Spectrometry Data
|
2025-02-06 |
