calculate N50 from FASTA/FASTQ files, producing both machine and human friendly outputs

Installers

conda install

  • noarch  v1.3.0
To install this package with conda run:
conda install -c bioconda n50

Description

a program to calculate size metrics of a FASTA (or FASTQ) file: minimum, maximum, average length, N50, N75, N90 and the area of the Nx curve (auN). Gzipped files are supported as input, and the output can be in compact, csv, tsv, json or screen friendly format.

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