| Package Name | Access | Summary | Updated |
|---|---|---|---|
| r-scistreer | public | Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells). | 2025-10-09 |
| perl-cgi | public | A generic file fetching mechanism. | 2025-10-09 |
| gencove | public | Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis. This command-line interface can be used to easily access the Gencove API. | 2025-10-09 |
| flumutdb | public | Utility module for FluMut database. | 2025-10-09 |
| perl-specio | public | Type constraints and coercions for Perl | 2025-10-09 |
| rust-gtars | public | Performance-critical tools to manipulate, analyze, and process genomic interval data. | 2025-10-09 |
| epimetheus-py | public | CLI tool for fast lookup in pileup for motif methylation. | 2025-10-09 |
| xclone | public | Inference of clonal Copy Number Alterations in single cells. | 2025-10-09 |
| iseq | public | iSeq is a Bash script that allows you to download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases. | 2025-10-09 |
| gbdraw | public | A genome diagram generator for microbes and organelles. | 2025-10-09 |
| ibridges | public | Package for accessing data and metadata on iRods servers. | 2025-10-09 |
| dxpy | public | DNAnexus Platform API bindings for Python | 2025-10-09 |
| centrosome | public | An open source image processing library. Dependency for CellProfiler | 2025-10-09 |
| bifidoannotator | public | Fine-grained annotation of bifidobacterial enzymes involved in human-milk glycan (HMG) utilization | 2025-10-09 |
| mgnify-pipelines-toolkit | public | Collection of scripts and tools for MGnify pipelines. | 2025-10-09 |
| impg | public | impg: implicit pangenome graphs. | 2025-10-09 |
| quickmirseq | public | A pipeline for fast and accurate quantification of both known miRNAs and isomiRs by joint processing multiple samples | 2025-10-09 |
| atol-qc-raw-ont | public | Run read QC on ONT reads. | 2025-10-09 |
| cyvcf2 | public | A cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files. | 2025-10-09 |
| b2btools | public | The bio2Byte software suite to predict protein biophysical properties | 2025-10-09 |
| commet | public | Comparing and combining multiple metagenomic datasets | 2025-10-09 |
| sorted_nearest | public | Find nearest interval. | 2025-10-09 |
| pmmrcalculator | public | A small python tool to calculate pairwise mismatch rate between all individuals in an EigenStrat dataset. | 2025-10-09 |
| bioconda-repodata-patches | public | Generate tweaks to index metadata, hosted separately from anaconda.org index. | 2025-10-09 |
| genesplicer | public | No Summary | 2025-10-08 |
