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r-scistreer

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Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells).

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::r-scistreer

Usage Tracking

1.2.0
1 / 8 versions selected
Downloads (Last 6 months): 0

About

Summary

Fast maximum-likelihood phylogeny inference from noisy single-cell data using the 'ScisTree' algorithm by Yufeng Wu (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer' provides an 'R' interface and improves speed via 'Rcpp' and 'RcppParallel', making the method applicable to massive single-cell datasets (>10,000 cells).

Last Updated

Oct 9, 2025 at 20:29

License

GPL-3.0-only

Total Downloads

436

Supported Platforms

linux-64
macOS-64