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matlock
|
public |
Simple tools for working with Hi-C data
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2024-12-14 |
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recgraph
|
public |
Optimal sequence-to-graph alignment with recombinations
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2024-12-14 |
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ucsc-chainstitchid
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public |
Join chain fragments with the same chain ID into a single
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2024-12-14 |
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transgenescan
|
public |
Software tool for finding genes in assembled transcripts from metatranscriptomic sequences.
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2024-12-14 |
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gatb
|
public |
The Genome Analysis Toolbox with de-Bruijn graph
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2024-12-14 |
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libidn
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public |
No Summary
|
2024-12-14 |
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unifrac-binaries
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public |
Fast phylogenetic diversity calculations
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2024-12-14 |
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r-spieceasi
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public |
Estimate networks from the precision matrix of compositional microbial abundance data.
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2024-12-14 |
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mgikit
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public |
mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
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2024-12-14 |
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abawaca
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public |
No Summary
|
2024-12-14 |
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mea
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public |
Mea was developed as part of the lab class "Bioinformatik von RNA- und Proteinstrukturen (Praktikum, Modul 10-202-2208)". The package predicts maximum expected accuracy (MEA) RNA secondary structures from dot plots of RNAs while correcting the score in dependence of base pair span. Furthermore, it provides tools to evaluate predictions and optimize parameters.
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2024-12-14 |
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ghostz
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public |
GHOSTZ is a highly efficient remote homologue detection tool
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2024-12-14 |
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r-metadig
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public |
A set of utility methods for authoring MetaDIG checks in R.
|
2024-12-14 |
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rukki
|
public |
Extracting paths from assembly graphs.
|
2024-12-14 |
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rfmix
|
public |
RFMix implements a fast discriminative approach to modeling ancestry along an admixed chromosome given observed haplotype sequences of known or inferred ancestry.
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2024-12-14 |
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micro_razers
|
public |
MicroRazerS - Rapid Alignment of Small RNA Reads
|
2024-12-14 |
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apu-label-propagation
|
public |
Adaptive Positive-Unlabelled label propagation
|
2024-12-14 |
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simka
|
public |
Simka and simkaMin are de novo comparative metagenomics tools. Simka represents each dataset as a k-mer spectrum and computes several classical ecological distances between them. SimkaMin outputs approximate (but very similar) results by subsampling the kmer space and requires much less computational resources.
|
2024-12-14 |
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ucsc-mrnatogene
|
public |
convert PSL alignments of mRNAs to gene annotations
|
2024-12-14 |
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r-qtlseqr
|
public |
QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis.
|
2024-12-14 |
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pbsim
|
public |
No Summary
|
2024-12-14 |
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r-recetox-waveica
|
public |
Removal of batch effects for large-scale untargeted metabolomics data based on wavelet transform.
|
2024-12-14 |
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gadem
|
public |
A Genetic Algorithm Guided Formation of Spaced Dyads Coupled with an EM Algorithm for Motif Discovery
|
2024-12-14 |
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genomescope2
|
public |
Reference-free profiling of polyploid genomes
|
2024-12-14 |
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phylommand
|
public |
Command-line phylogenetics tools.
|
2024-12-14 |
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ucsc-fasplit
|
public |
Split an fa file into several files.
|
2024-12-14 |
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ucsc-validatemanifest
|
public |
Validates the ENCODE3 manifest.txt file.
|
2024-12-14 |
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ucsc-chromgraphfrombin
|
public |
Convert chromGraph binary to ascii format.
|
2024-12-14 |
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prodigal-gv
|
public |
A fork of Prodigal meant to improve gene calling for giant viruses
|
2024-12-14 |
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paraclu
|
public |
Paraclu finds clusters in data attached to sequences.
|
2024-12-14 |
|
balrog
|
public |
Balrog: A universal protein model for prokaryotic gene prediction
|
2024-12-14 |
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cfm
|
public |
Tools for applying Competitive Fragmentation Modeling (CFM) to spectrum prediction and metabolite identification tasks, as well as a tools for fragment generation and peak annotation.
|
2024-12-14 |
|
dascrubber
|
public |
Alignment-based Scrubbing pipeline
|
2024-12-14 |
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ucsc-fafiltern
|
public |
Get rid of sequences with too many N's
|
2024-12-14 |
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ucsc-paranodestop
|
public |
Shut down parasol node daemons on a list of machines
|
2024-12-14 |
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codingquarry
|
public |
CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts.
|
2024-12-14 |
|
rerconverge
|
public |
RERconverge is a set of software written in R that estimates the correlation between relative evolutionary rates of gene.
|
2024-12-14 |
|
fastool
|
public |
A simple and quick tool to read huge FastQ and FastA files (both normal and gzipped) and manipulate them.
|
2024-12-14 |
|
squigulator
|
public |
A tool for simulating nanopore raw signal data
|
2024-12-14 |
|
fqtk
|
public |
A toolkit for working with FASTQ files.
|
2024-12-14 |
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fastq-scan
|
public |
FASTQ summary statistics in JSON format
|
2024-12-14 |
|
rustybam
|
public |
Mitchell Vollger's bioinformatics rust utilities.
|
2024-12-14 |
|
ucsc-pslxtofa
|
public |
convert pslx (with sequence) to fasta file
|
2024-12-14 |
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genomeconstellation
|
public |
Fast, accurate and versatile k-mer based classification system
|
2024-12-14 |
|
mp-est
|
public |
Maximum Pseudo-likelihood Estimation of Species Trees
|
2024-12-14 |
|
ratatosk
|
public |
Hybrid error correction of long reads using colored de Bruijn graphs
|
2024-12-14 |
|
linearfold
|
public |
Linear-Time Prediction for RNA Secondary Structures
|
2024-12-14 |
|
niemagraphgen
|
public |
Niema's C++ implementations of graph generators
|
2024-12-14 |
|
fastobo
|
public |
Faultless AST for Open Biomedical Ontologies in Python
|
2024-12-14 |
|
kfoots
|
public |
The package provides methods for fitting multivariate count data with a mixture model or a hidden markov model. Each mixture component is a negative multivariate random variable and an EM algorithm is used to maximize the likelihood.
|
2024-12-14 |
