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bioconductor-affyrnadegradation
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public |
Analyze and correct probe positional bias in microarray data due to RNA degradation
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2024-12-18 |
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bioconductor-ocplus
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public |
Operating characteristics plus sample size and local fdr for microarray experiments
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2024-12-18 |
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bioconductor-densvis
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public |
Density-Preserving Data Visualization via Non-Linear Dimensionality Reduction
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2024-12-18 |
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epic2
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public |
Ultraperformant Chip-Seq broad domain finder based on SICER.
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2024-12-18 |
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bioconductor-sconify
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public |
A toolkit for performing KNN-based statistics for flow and mass cytometry data
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2024-12-18 |
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bioconductor-biomvcclass
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public |
Model-View-Controller (MVC) Classes That Use Biobase
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2024-12-18 |
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r-structssi
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public |
Performs multiple testing corrections that take specific structure of hypotheses into account.
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2024-12-18 |
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perl-list-moreutils-xs
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public |
Provide the stuff missing in List::Util in XS
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2024-12-18 |
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bioconductor-flowai
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public |
Automatic and interactive quality control for flow cytometry data
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2024-12-18 |
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bioconductor-targetdecoy
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public |
Diagnostic Plots to Evaluate the Target Decoy Approach
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2024-12-18 |
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bioconductor-deconrnaseq
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public |
Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data
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2024-12-18 |
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bioconductor-affycompdata
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public |
affycomp data
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2024-12-18 |
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bioconductor-cardinalio
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public |
Read and write mass spectrometry imaging files
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2024-12-18 |
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bioconductor-mzr
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public |
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)
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2024-12-18 |
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pysam
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public |
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
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2024-12-18 |
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deltapd
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public |
DeltaPD is a tool used to determine outliers in a gene tree when compared against a reference tree.
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2024-12-18 |
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r-genomictools.filehandler
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public |
A collection of I/O tools for handling the most commonly used genomic datafiles, like fasta/-q, bed, gff, gtf, ped/map and vcf.
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2024-12-18 |
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mutyper
|
public |
A Python package and command line utility for annotating the local ancestral sequence context of biallelic SNPs.
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2024-12-18 |
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metamdbg
|
public |
MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
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2024-12-18 |
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bioconductor-matter
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public |
Out-of-core statistical computing and signal processing
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2024-12-18 |
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bioconductor-mzid
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public |
An mzIdentML parser for R
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2024-12-18 |
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lastz
|
public |
LASTZ is a program for aligning DNA sequences, a pairwise aligner.
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2024-12-18 |
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centrosome
|
public |
An open source image processing library. Dependency for CellProfiler
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2024-12-18 |
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samsum
|
public |
A light-weight python package for summarizing sequence coverage from SAM and BAM files
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2024-12-18 |
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bioconductor-protgenerics
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public |
Generic infrastructure for Bioconductor mass spectrometry packages
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2024-12-18 |
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rnashapes
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public |
RNAshape abstraction maps structures to a tree-like domain of shapes, retaining adjacency and nesting of structural features, but disregarding helix lengths. Shape abstraction integrates well with dynamic programming algorithms, and hence it can be applied during structure prediction rather than afterwards. This avoids exponential explosion and can still give us a non-heuristic and complete account of properties of the molecule's folding space.
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2024-12-18 |
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acms
|
public |
Ambivalent Covariance Models (aCMs) are our prototypic suggestion to extend CMs with more than one consensus structure.
|
2024-12-18 |
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pkiss
|
public |
RNA secondary structure prediction including K-type and kissing hairpin- pseudoknots.
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2024-12-18 |
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knotinframe
|
public |
Predicts -1 frameshift sites with simple pseudoknots
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2024-12-18 |
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bioconductor-seqtools
|
public |
Analysis of nucleotide, sequence and quality content on fastq files
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2024-12-18 |
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minimap2
|
public |
A versatile pairwise aligner for genomic and spliced nucleotide sequences.
|
2024-12-18 |
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bioconductor-snpstats
|
public |
SnpMatrix and XSnpMatrix classes and methods
|
2024-12-18 |
|
opticlust
|
public |
Single cell clustering and recommendations at a glance.
|
2024-12-18 |
|
lexicmap
|
public |
efficient sequence alignment against millions of prokaryotic genomes
|
2024-12-18 |
|
svseq2
|
public |
An improved approach for accurate and efficient calling of structural variations with low-coverage sequence data
|
2024-12-18 |
|
melon
|
public |
Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
|
2024-12-18 |
|
seqsizzle
|
public |
A pager for viewing FASTQ files with fuzzy adaptor matching and coloring.
|
2024-12-18 |
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cortexpy
|
public |
A Python API for manipulating (Mc)Cortex de novo assembly graph and link data
|
2024-12-18 |
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bioconductor-fmcsr
|
public |
Mismatch Tolerant Maximum Common Substructure Searching
|
2024-12-18 |
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bioconductor-affy
|
public |
Methods for Affymetrix Oligonucleotide Arrays
|
2024-12-18 |
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r-restfulr
|
public |
Models a RESTful service as if it were a nested R list.
|
2024-12-18 |
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necat
|
public |
Nanopore data assembler
|
2024-12-18 |
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medicc2
|
public |
Whole-genome doubling-aware copy number phylogenies for cancer evolution
|
2024-12-18 |
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bioconductor-mscoreutils
|
public |
Core Utils for Mass Spectrometry Data
|
2024-12-18 |
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bioconductor-multtest
|
public |
Resampling-based multiple hypothesis testing
|
2024-12-18 |
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bioconductor-hem
|
public |
Heterogeneous error model for identification of differentially expressed genes under multiple conditions
|
2024-12-18 |
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bioconductor-mulcom
|
public |
Calculates Mulcom test
|
2024-12-18 |
|
bioconductor-eir
|
public |
Accelerated similarity searching of small molecules
|
2024-12-18 |
|
bioconductor-cancerclass
|
public |
Development and validation of diagnostic tests from high-dimensional molecular data
|
2024-12-18 |
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bioconductor-discordant
|
public |
The Discordant Method: A Novel Approach for Differential Correlation
|
2024-12-18 |
