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postmaster
|
public |
Postmaster is a tool for annotating transcriptome alignments with posterior alignment probabilities derived from salmon quantifications.
|
2025-04-22 |
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danbing-tk
|
public |
Toolkit for VNTR genotyping and repeat-pan genome graph construction
|
2025-04-22 |
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longbow
|
public |
A Python program for nanopore sequencing basecalling configuration prediction
|
2025-04-22 |
|
r-psminer
|
public |
Utilities for interacting with the pathogensurveillance pipeline.
|
2025-04-22 |
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te-aid
|
public |
Annotation helper tool for the manual curation of transposable element consensus sequences
|
2025-04-22 |
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lassaseq
|
public |
Tool for downloading Lassa virus sequences
|
2025-04-22 |
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ebolaseq
|
public |
Tool for downloading and analyzing Ebola virus sequences
|
2025-04-22 |
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enviroampdesigner
|
public |
Tool for training model and classifying reads from environmental ONT amplicon sequencing.
|
2025-04-22 |
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snakemake-storage-plugin-sharepoint
|
public |
Snakemake storage plugin for reading and writing files on Microsoft SharePoint.
|
2025-04-22 |
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autocycler
|
public |
A tool for generating consensus long-read assemblies for bacterial genomes.
|
2025-04-22 |
|
cayman
|
public |
A command-line profiling tool for profiling CAZyme abundances in metagenomic datasets.
|
2025-04-22 |
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mity
|
public |
Mity is a bioinformatic analysis pipeline designed to call mitochondrial SNV and INDEL variants from Whole Genome Sequencing (WGS) data.
|
2025-04-22 |
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vuegen
|
public |
VueGen automates the creation of reports from bioinformatics outputs,
supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js,
Jupyter notebooks, and Streamlit web applications. Users simply
provide a directory with output files—such as plots, tables, networks,
Markdown text, and HTML files—and VueGen compiles them into a structured report.
|
2025-04-22 |
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pvga
|
public |
PVGA is a powerful virus-focused assembler that does both assembly and polishing.
|
2025-04-22 |
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gqlib
|
public |
A gene quantification library.
|
2025-04-22 |
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mitosalt
|
public |
MitoSAlt is a pipeline to identify large deletions and duplications in human and mouse mitochondrial genomes from next generation whole genome/exome sequencing data. The pipeline is capable of analyzing any circular genome in principle, as long as a proper configuration file is provided.
|
2025-04-22 |
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mitorsaw
|
public |
A tool for mitochondrial analysis for HiFi sequencing data
|
2025-04-22 |
|
artex
|
public |
Artex - Artic pipeline extension
|
2025-04-22 |
|
metator
|
public |
Metagenomic binning based on Hi-C data.
|
2025-04-22 |
|
ctc-scite
|
public |
CTC-SCITE is a software package to infer cell lineages of single-cells and clusters of single-cells.
|
2025-04-22 |
|
vpt
|
public |
Command line tool for highly parallelized processing of Vizgen data
|
2025-04-22 |
|
vpt-core
|
public |
Core components for the Vizgen Post-processing Tool
|
2025-04-22 |
|
neffy-cli
|
public |
NEFF calculator and MSA file converter
|
2025-04-22 |
|
baczy
|
public |
Bacterial toolkit
|
2025-04-22 |
|
gfviewer
|
public |
A bioinformatics tool for visualizing the localization of multi-gene families across the genome of a given organism.
|
2025-04-22 |
