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Package Name Access Summary Updated
bioconductor-porcine.db public Affymetrix Affymetrix Porcine Array annotation data (chip porcine) 2024-12-26
bioconductor-xlaevis.db public Affymetrix Xenopus laevis annotation data (chip xlaevis) assembled using data from public repositories 2024-12-26
bioconductor-chicken.db public Affymetrix Affymetrix Chicken Array annotation data (chip chicken) 2024-12-26
bioconductor-ecolileucine public Experimental data with Affymetrix E. coli chips 2024-12-26
bioconductor-indac.db public INDAC FlyChip_long_oligonucleotide_002 (FL002) annotation data (chip indac) assembled using data from public repositories 2024-12-26
r-chromium public Toolkit for 10X Genomics Chromium single cell data. 2024-12-26
bioconductor-drosgenome1.db public Affymetrix Affymetrix DrosGenome1 Array annotation data (chip drosgenome1) 2024-12-26
bioconductor-drosophila2.db public Affymetrix Affymetrix Drosophila_2 Array annotation data (chip drosophila2) 2024-12-26
bioconductor-epivizrchart public R interface to epiviz web components 2024-12-26
bioconductor-celegans.db public Affymetrix Affymetrix Celegans Array annotation data (chip celegans) 2024-12-26
bioconductor-scruff public Single Cell RNA-Seq UMI Filtering Facilitator (scruff) 2024-12-26
bioconductor-gghumanmethcancerpanelv1.db public Illumina Golden Gate Human Methylation Cancer Panel Version 1 annotation data (chip GGHumanMethCancerPanelv1) assembled using data from public repositories 2024-12-26
bioconductor-cafe public Chromosmal Aberrations Finder in Expression data 2024-12-26
bioconductor-canine.db public Affymetrix Affymetrix Canine Array annotation data (chip canine) 2024-12-26
bioconductor-canine2.db public Affymetrix Affymetrix Canine_2 Array annotation data (chip canine2) 2024-12-26
bioconductor-genomicozone public Delineate outstanding genomic zones of differential gene activity 2024-12-26
bioconductor-liquidassociation public LiquidAssociation 2024-12-26
bioconductor-apcomplex public Estimate protein complex membership using AP-MS protein data 2024-12-26
bioconductor-msgbsr public msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions 2024-12-26
bioconductor-yeast2.db public Affymetrix Affymetrix Yeast_2 Array annotation data (chip yeast2) 2024-12-26
bioconductor-r3cpet public 3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process 2024-12-26
bioconductor-ygs98.db public Affymetrix Affymetrix YG_S98 Array annotation data (chip ygs98) 2024-12-26
bioconductor-esetvis public Visualizations of expressionSet Bioconductor object 2024-12-26
bioconductor-xhybcasneuf public EBI/PSB cross-hybridisation study package 2024-12-26
bioconductor-somaticsignatures public Somatic Signatures 2024-12-26
bioconductor-bovine.db public Affymetrix Affymetrix Bovine Array annotation data (chip bovine) 2024-12-26
bioconductor-u133x3p.db public Affymetrix Human X3P Array annotation data (chip u133x3p) assembled using data from public repositories 2024-12-26
bioconductor-riboprofiling public Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation 2024-12-26
bioconductor-hgug4112a.db public Agilent "Human Genome, Whole" annotation data (chip hgug4112a) assembled using data from public repositories 2024-12-26
bioconductor-intansv public Integrative analysis of structural variations 2024-12-26
bioconductor-hu35ksubd.db public Affymetrix Affymetrix Hu35KsubD Array annotation data (chip hu35ksubd) 2024-12-26
bioconductor-hu35ksuba.db public Affymetrix Affymetrix Hu35KsubA Array annotation data (chip hu35ksuba) 2024-12-26
r-ggcoverage public The goal of 'ggcoverage' is to simplify the process of visualizing genome coverage. It contains functions to load data from BAM, BigWig or BedGraph files, create genome coverage plot, add various annotations to the coverage plot, including base and amino acid annotation, GC annotation, gene annotation, transcript annotation, ideogram annotation and peak annotation. 2024-12-26
bioconductor-hugene10stprobeset.db public Affymetrix hugene10 annotation data (chip hugene10stprobeset) 2024-12-26
trinity public Trinity assembles transcript sequences from Illumina RNA-Seq data. 2024-12-26
bioconductor-hgu95d.db public Affymetrix Affymetrix HG U95D Array annotation data (chip hgu95d) 2024-12-26
bioconductor-hgu95c.db public Affymetrix Affymetrix HG U95C Array annotation data (chip hgu95c) 2024-12-26
r-acidsinglecell public Toolkit for single-cell RNA-seq analysis that extends the functionality of SingleCellExperiment. 2024-12-26
bioconductor-pocrcannotation.db public A package containing metadata for POCRC arrays assembled using data from public repositories 2024-12-26
bioconductor-operonhumanv3.db public FHCRC Nelson Lab OperonHumanV3 Annotation Data (OperonHumanV3) assembled using data from public repositories 2024-12-26
r-bcbiobase public Base functions and generics for bcbio R packages. 2024-12-26
bioconductor-hthgu133plusa.db public Affymetrix Affymetrix HT_HG-U133_Plus_A Array annotation data (chip hthgu133plusa) 2024-12-26
bioconductor-tfhaz public Transcription Factor High Accumulation Zones 2024-12-26
bioconductor-hta20probeset.db public Affymetrix hta20 annotation data (chip hta20probeset) 2024-12-26
bioconductor-ribocrypt public Interactive visualization in genomics 2024-12-26
bioconductor-hgug4100a.db public Agilent Human 1 cDNA Microarray Kit annotation data (chip hgug4100a) assembled using data from public repositories 2024-12-26
iseq public iSeq is a Bash script that allows you to download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases. 2024-12-26
bioconductor-hgu133plus2.db public Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2) 2024-12-26
bioconductor-fraser public Find RAre Splicing Events in RNA-Seq Data 2024-12-26
bioconductor-hthgu133a.db public Affymetrix Affymetrix HT_HG-U133A Array annotation data (chip hthgu133a) 2024-12-26
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