bioconda / packages / bioconductor-scruff 1.12.0

Single Cell RNA-Seq UMI Filtering Facilitator (scruff)

Installers

Info: This package contains files in non-standard labels.

conda install

  • noarch  v1.12.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-scruff
conda install -c bioconda/label/gcc7 bioconductor-scruff

Description

A pipeline which processes single cell RNA-seq (scRNA-seq) reads from CEL-seq and CEL-seq2 protocols. Demultiplex scRNA-seq FASTQ files, align reads to reference genome using Rsubread, and generate UMI filtered count matrix. Also provide visualizations of read alignments and pre- and post-alignment QC metrics.


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