bioconda / packages / bioconductor-riboprofiling 1.20.0

Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.10.0
  • osx-64  v1.7.1
  • noarch  v1.20.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-riboprofiling
conda install -c bioconda/label/gcc7 bioconductor-riboprofiling
conda install -c bioconda/label/cf201901 bioconductor-riboprofiling

Description

Starting with a BAM file, this package provides the necessary functions for quality assessment, read start position recalibration, the counting of reads on CDS, 3'UTR, and 5'UTR, plotting of count data: pairs, log fold-change, codon frequency and coverage assessment, principal component analysis on codon coverage.

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