Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation
conda install -c bioconda bioconductor-riboprofiling
conda install -c bioconda/label/gcc7 bioconductor-riboprofiling
conda install -c bioconda/label/cf201901 bioconductor-riboprofiling
Starting with a BAM file, this package provides the necessary functions for quality assessment, read start position recalibration, the counting of reads on CDS, 3'UTR, and 5'UTR, plotting of count data: pairs, log fold-change, codon frequency and coverage assessment, principal component analysis on codon coverage.