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nanomonsv
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public |
Python tools for detecting structural variation from nanopore sequence data
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2024-06-03 |
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sspace_basic
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public |
Scaffolding Pre-Assemblies After Contig Extension (SSPACE)
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2024-06-03 |
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dodge
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public |
Dynamic Outbreak Detection for Genomic Epidemiology. Automated point source bacterial outbreak detection using cumulative long term genomic surveillance.
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2024-06-03 |
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airr
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public |
AIRR Community Data Representation Standard reference library for antibody and TCR sequencing data. Citations: AIRR standards <doi:10.5281/zenodo.1185414>.
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2024-06-03 |
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vcf2maf
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public |
Convert a VCF into a MAF where each variant is annotated to only one of all possible gene isoforms.
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2024-05-31 |
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anospp-analysis
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public |
ANOSPP data analysis
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2024-05-31 |
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npstructures
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public |
Simple data structures that augments the numpy library
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2024-05-31 |
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hmftools-mark-dups
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public |
Mark read duplicates and form consenus sequences
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2024-05-31 |
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perl-spreadsheet-parseexcel
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public |
Read information from an Excel file.
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2024-05-31 |
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kinship-read
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public |
Relationship Estimation from Ancient DNA version 2 (READv2)
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2024-05-30 |
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bioconductor-esatac
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public |
An Easy-to-use Systematic pipeline for ATACseq data analysis
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2024-05-30 |
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bioconductor-contibait
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public |
Improves Early Build Genome Assemblies using Strand-Seq Data
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2024-05-30 |
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drop
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public |
Detection of RNA Outlier Pipeline
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2024-05-29 |
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venndata
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public |
Package for plotting Venn diagrams with more than 3 sets
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2024-05-29 |
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bioconductor-gnet2
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public |
Constructing gene regulatory networks from expression data through functional module inference
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2024-05-28 |
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bioconductor-rbowtie2
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public |
An R Wrapper for Bowtie2 and AdapterRemoval
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2024-05-28 |
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bioconductor-exomecopy
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public |
Copy number variant detection from exome sequencing read depth
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2024-05-28 |
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bioconductor-bdmmacorrect
|
public |
Meta-analysis for the metagenomic read counts data from different cohorts
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2024-05-28 |
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bioconductor-grohmm
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public |
GRO-seq Analysis Pipeline
|
2024-05-28 |
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sinto
|
public |
sinto: tools for single-cell data processing
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2024-05-28 |
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rabbittclust
|
public |
RabbitTClust enables fast clustering analysis of millions bacteria genomes with MinHash sketches
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2024-05-28 |
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slivar
|
public |
filter/annotate variants in VCF/BCF format with simple expressions
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2024-05-28 |
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syri
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public |
Synteny and rearrangement identifier between whole-genome assemblies
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2024-05-28 |
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smallgenomeutilities
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public |
A collection of scripts that are useful for dealing with viral RNA NGS data.
|
2024-05-27 |
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pydbsnp
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public |
Interface with dbSNP VCF data
|
2024-05-27 |
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cnasim
|
public |
Improved simulation of single-cell copy number profiles and DNA-seq data from tumors
|
2024-05-27 |
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metaphlan
|
public |
Metagenomic Phylogenetic Analysis
|
2024-05-27 |
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python-crypt4gh
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public |
GA4GH cryptographic tools
|
2024-05-27 |
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svclone
|
public |
Computational method for inferring cancer cell fraction of tumour SVs from WGS
|
2024-05-27 |
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hmftools-sv-prep
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public |
SV Prep generates a maximally filtered SV BAM file by identifying candidate SV junctions and extracting all reads that may provide support to that junction.
|
2024-05-26 |
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rnavirhost
|
public |
RNAVirHost: a machine learning-based method for predicting hosts of RNA viruses through viral genomes
|
2024-05-25 |
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toil
|
public |
A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
|
2024-05-24 |
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methplotlib
|
public |
Plot methylation data obtained from nanopolish
|
2024-05-24 |
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kitsune
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public |
kitsune
|
2024-05-24 |
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biobb_ml
|
public |
Biobb_ml is the Biobb module collection to perform machine learning predictions.
|
2024-05-24 |
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wbuild
|
public |
Automatic build tool for R Reports
|
2024-05-24 |
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wgd
|
public |
wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
|
2024-05-24 |
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shigapass
|
public |
ShigaPass: An in silico tool to predict Shigella serotypes
|
2024-05-24 |
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pxblat
|
public |
PxBLAT: An Efficient and Ergonomics Python Binding Library for BLAT.
|
2024-05-24 |
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oncopipe
|
public |
Functions for running Snakemake modules
|
2024-05-23 |
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cured
|
public |
Classification Using Restriction Enzyme Diagnostics
|
2024-05-23 |
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naibr-plus
|
public |
Identify novel adjacencies created by structural variations using linked-read data
|
2024-05-23 |
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tsebra
|
public |
TSEBRA is a combiner tool that selects transcripts from gene predictions based on the support by extrisic evidence in form of introns and start/stop codons.
|
2024-05-23 |
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snpeff
|
public |
Genetic variant annotation and effect prediction toolbox
|
2024-05-23 |
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bioconductor-maigespack
|
public |
Functions to handle cDNA microarray data, including several methods of data analysis
|
2024-05-10 |
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pstrain
|
public |
An Iterative Microbial Strains Profiling Algorithm for Shotgun Metagenomic Sequencing Data
|
2024-05-10 |
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ebcsgen
|
public |
eBSCgen is a tool for development and analysis of models written in Biochemical Space Language (BCSL).
|
2024-05-10 |
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liqa
|
public |
A statistical tool to quantify isoform-specific expression using long-read RNA-seq.
|
2024-05-10 |
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kpop
|
public |
An assembly-free and scalable method for the comparative analysis of microbial genomes, based on full k-mer spectra and dataset-specific transformations.
|
2024-05-09 |
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yaggo
|
public |
Yaggo is a tool to generate command line parsers for C++. Yaggo stands for "Yet Another GenGetOpt" and is inspired by GNU Gengetopt.
|
2024-05-09 |
