| Package Name | Access | Summary | Updated |
|---|---|---|---|
| varcode | public | Variant annotation in Python | 2025-04-22 |
| nolb | public | NOn-Linear rigid Block NMA approach (NOLB) is a conceptually simple and computationally efficient method for non-linear normal mode analysis. | 2025-04-22 |
| sercol | public | Rich collection class with grouping and filtering helpers | 2025-04-22 |
| taxpasta | public | TAXonomic Profile Aggregation and STAndardisation | 2025-04-22 |
| b2b-utils | public | Genomics tools from BASE2BIO | 2025-04-22 |
| binspreader | public | BinSPreader is a tool for improving existing binning using assembly graph and other sources of connectivity information | 2025-04-22 |
| checkm2 | public | Assessing the quality of metagenome-derived genome bins using machine learning. | 2025-04-22 |
| goblin | public | Generate trusted prOteins to supplement BacteriaL annotatIoN | 2025-04-22 |
| hapsolo | public | An optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding. | 2025-04-22 |
| whokaryote | public | Classify metagenomic contigs as eukaryotic or prokaryotic | 2025-04-22 |
| cagee | public | Analyzes changes in gene expression in a way that accounts for phylogenetic history and provides a statistical foundation for evolutionary inferences | 2025-04-22 |
| metamobilepicker | public | MetaMobilePicker: identification of MGEs and ARGs based in metagenomic samples | 2025-04-22 |
| alcor | public | Software for alignment-free simulation, mapping, and visualization of low-complexity regions in FASTA data. | 2025-04-22 |
| modle | public | High-performance stochastic modeling of DNA loop extrusion interactions | 2025-04-22 |
| mfold | public | Mfold web server for nucleic acid folding and hybridization prediction. | 2025-04-22 |
| r-cellosaurus | public | Cellosaurus identifier mapping toolkit. | 2025-04-22 |
| anansnake | public | Automated ANANSE analysis with seq2science & snakemake! | 2025-04-22 |
| finemap | public | Program for identifying causal SNPs and their effect sizes and heritability contributions | 2025-04-22 |
| emerald | public | Unlocking the suboptimal pairwise alignment space for protein sequences | 2025-04-22 |
| symbiontscreener | public | Symbiont-Screener is a reference-free approach to identifying high-confidence host's long reads from symbionts and contaminants and overcoming the low sequencing accuracy according to a trio-based screening model. | 2025-04-22 |
| mhcgnomes | public | Python library for parsing MHC nomenclature in the wild | 2025-04-22 |
| fqtk | public | A toolkit for working with FASTQ files. | 2025-04-22 |
| psmc | public | This software package infers population size history from a diploid sequence using the Pairwise Sequentially Markovian Coalescent (PSMC) model | 2025-04-22 |
| ccphylo | public | CCPhylo enables phylogenetic analysis of samples based on overlaps between nucleotide created by e.g. KMA. Input file(s) may be given as non-option arguments succeding all options. | 2025-04-22 |
| bionumpy | public | Library for working with biological sequence data as numpy arrays. | 2025-04-22 |
